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Report for CCDS27802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27802.1 Public Mus musculus 15 Ccdc65 23 108 98 CCDS HistoryNCBI Gene:105833Re-query CCDS DB by CCDS ID:27802.1Re-query CCDS DB by GeneID:105833See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003444.5 ENSMUSP00000003444.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003444.5Link to Ensembl Protein Viewer:ENSMUSP00000003444.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003444Re-query CCDS DB by Protein ID:ENSMUSP00000003444
Original member Current member NCBI NM_153518.2 NP_705738.1 Accepted alive Link to Nucleotide Sequence:NM_153518.2Link to Protein Sequence:NP_705738.1Re-query CCDS DB by Nucleotide ID:NM_153518Re-query CCDS DB by Protein ID:NP_705738Link to BLAST:NP_705738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705738.1 493 Q8VHI7-1 493 100% 0 0

Chromosomal Locations for CCDS 27802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98708396 98708536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98709055 98709222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98717424 98717593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98718712 98718850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98720584 98720781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98720958 98721176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98722518 98722670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98722814 98723107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGTCTAAAAAAGGAAAAAAGCCCAAGTTGCCCAAGGCACCCCTGTCCGAGGAAGATCAGCTGCTTATAT
TTCAGCAAAAGATGCTGGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGACTCCTCACCCAGTTCTTGAA
GGACAAGTTGGCCAAAGAAGAACACAACAGCGCTCTAAACCTTAATAAGATTAACACGCAGTGGAGAACC
ATCCTCAGGGAGGTGAAGACCAGAGAGCTTCACCAAGACATCGAGATCCTCAGCCAGACCTTTGAACGCG
TGGTGGACTGTAAGGACAGCGTCATCAAGTCTCTGGCTAAGGACTTGACTGAAGCTGAGGAGCAGTATGC
CCACGCTCTGCGTAGTCACTTGCACAACATTGACCAGCTCTTGACCCTGCAACGACGCCGGCTCGGCCTC
CTGGAGGAAAATTACAACATGGAGCTCGAGGTCCTGACCAAAGAGTTTGAGACGGAAAGGAAATTGATCA
TTGACCATCATGAGAAGGAGATGCACTACCTACAGGACGTCTTCATGGCCATGGAGCAGAACTACATAGA
TTCCGAGTATGAGAGCAAGCTGGAGTTCCAGAGCATGTGGGATGACCTTAAAAACAAGAATTTAGAAGAG
AAGCACTTTCTTCGCCTACAACTGGAGAACATAGTGGAAGATCTGTGGCGGAGGTTCCAGGATGCACTCA
AGAATTACACCGACGCCACGGAGGACCGGAAGATCGCCTTTGAGTACCTGAAGGTGAAGGATGAGAAAAG
CTCCAAAGAGATTGAGACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGG
AAGATCGTAGCCCACAGCCGCGAAGGGGAATGGCAGAATCAGTGCATCCGGAATAACAAGGAGCTGGTCC
ACGTGCAGCTTCGAAAACTTAAGGTCCAGAGGACCCAGGCTCGGACCCTATCTCAGGAGAACTTAGTCAA
ACTCACCCTGGAAAGTAATGCCACCCTCAAGGCCCTGAAGAAGGTCGTGGAAAAGGGTGAAAAGATCCTT
AAGCTTGCTGAAATATGTAGGAAATTCGAAACCGAGGAAGAAAAGGTGCTGCCTTTCTACTCTTCAGTGC
TGACTCCCGAGGAGCAGGAAGAGGCCAAGCTCCAGAACCCGGAGGATATCACAGAGGACCTTGCCAAGAT
TATGATGGACTACGCGGGGATGGAGAACTTCTGGAAGAGATACAACAAGGTGAAACTGGAGGTCCTGAGT
CTCCAGCACAGGCGGCTGCAGCTGCTGGATATCAGTAGCAAGCTGCGGGAGATGCTCAAACAGTACTTGG
ATGGCATCTCCGTGAGCGACGAAGTGCTGAGCCACCTCAACCCGCTCTTCGTAGTAAACCACAGAAGCAA
CCTACCCCAGCTGCCCCCACCCTCGGCCCAGCCTGTCTACAACGTCATCGAAGCCGCCCACATTGCCTCC
CATATCCTGTGA

Translation (493 aa):
MSKKGKKPKLPKAPLSEEDQLLIFQQKMLADEEAAKKKERLLTQFLKDKLAKEEHNSALNLNKINTQWRT
ILREVKTRELHQDIEILSQTFERVVDCKDSVIKSLAKDLTEAEEQYAHALRSHLHNIDQLLTLQRRRLGL
LEENYNMELEVLTKEFETERKLIIDHHEKEMHYLQDVFMAMEQNYIDSEYESKLEFQSMWDDLKNKNLEE
KHFLRLQLENIVEDLWRRFQDALKNYTDATEDRKIAFEYLKVKDEKSSKEIETQMKKIQKLQETIGILKG
KIVAHSREGEWQNQCIRNNKELVHVQLRKLKVQRTQARTLSQENLVKLTLESNATLKALKKVVEKGEKIL
KLAEICRKFETEEEKVLPFYSSVLTPEEQEEAKLQNPEDITEDLAKIMMDYAGMENFWKRYNKVKLEVLS
LQHRRLQLLDISSKLREMLKQYLDGISVSDEVLSHLNPLFVVNHRSNLPQLPPPSAQPVYNVIEAAHIAS
HIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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