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Report for CCDS27738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27738.1 Public Mus musculus 15 Selenoo 23 108 98 CCDS HistoryNCBI Gene:223776Re-query CCDS DB by CCDS ID:27738.1Re-query CCDS DB by GeneID:223776See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 27738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082439.4 ENSMUSP00000081020.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082439.4Link to Ensembl Protein Viewer:ENSMUSP00000081020.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000082439Re-query CCDS DB by Protein ID:ENSMUSP00000081020
Original member Current member NCBI NM_027905.3 NP_082181.2 Accepted alive Link to Nucleotide Sequence:NM_027905.3Link to Protein Sequence:NP_082181.2Re-query CCDS DB by Nucleotide ID:NM_027905Re-query CCDS DB by Protein ID:NP_082181Link to BLAST:NP_082181.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082181.2 667 Q9DBC0 667 100% 0 0

Chromosomal Locations for CCDS 27738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89089109 89089665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89092704 89092907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89094137 89094323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89095599 89095729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89096539 89096819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89098632 89098776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89099263 89099448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89099587 89099743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89099831 89099986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 665

Nucleotide Sequence (2004 nt):
ATGGCCTCTGTCAGGGCCGCGGTCGGGGCCTCGCTCGCGGTTGCCCGAACCCGGCCACGGTGCGTCGGTC
TC
GCGCTTCCGTCGTCCGCGCCCCGGTCCGCCTGGGCTGCAGCTATGGAGCCCACGCCGCGTTGGCTGGC
A
GGGCTGCGCTTTGACAACCGCGCCCTGCGTGAGCTGCCGGTGGAGACGCCGCCGCCTGGGCCGGAGGAC
TCC
CTGGCCACCCCGCGGCCGGTGCCCGGAGCCTGCTTCAGCCGTGCGCGGCCGGCCCCGCTACGGCGGC
CG
CGCCTGGTGGCGCTGTCAGAGCCCGCGCTGGCCTTGCTGGGGCTCGAGGCCAGCGAGGAGGCCGAGGT
C
GAGGCCGAAGCTGCGCTCTTCTTCAGCGGCAATGCGCTGCTGCCGGGCACCGAGCCCGCCGCGCACTGC
TAC
TGTGGACACCAGTTCGGTCAGTTCGCTGGGCAGTTGGGCGACGGTGCCGCCATGTACCTGGGCGAGG
TG
TGCACAGCGGCCGGCGAGCGCTGGGAGCTGCAGCTCAAAGGCGCCGGCCCCACGCCCTTCTCCAGACA
A
GCCGATGGTCGCAAAGTCCTGCGGTCAAGCATCCGTGAGTTCCTGTGCAGCGAAGCCATGTTTCACCTG
GGA
ATCCCCACCACGAGGGCCGGGGCCTGCGTCACGTCTGAGTCTACAGTGATGCGAGACGTGTTCTATG
AT
GGTAATCCAAAATATGAAAAGTGCACGGTTGTGTTGCGTATAGCTCCCACTTTCATAAGATTCGGCTC
C
TTTGAAATTTTTAAGCCTCCTGATGAGCACACAGGGCGTGCAGGCCCCAGCGTGGGACGAGATGATATC
CGA
GTCCAATTGCTTGACTATGTCATCAGCTCTTTCTACCCTGAGATCCAGGCTGCCCATACCTGTGACA
CG
GACAACATACAGAGGAACGCGGCCTTTTTCAGAGAGGTGACACAGCGAACAGCACGGATGGTTGCTGA
A
TGGCAGTGTGTTGGCTTTTGCCATGGCGTGCTCAACACTGACAACATGAGCATTGTGGGGCTCACTATC
GAC
TATGGACCCTTTGGCTTCCTGGACAGGTACGACCCTGACCATATATGTAATGCCTCTGACAATGCTG
GG
CGCTACACATACAGTAAGCAGCCCCAGGTATGCAAGTGGAATCTGCAGAAACTAGCTGAAGCATTGGA
G
CCTGAACTGCCACTTGCGCTGGCTGAGGCCATTCTAAAAGAGGAGTTTGACACTGAGTTCCAAAGGCAC
TAT
CTACAGAAGATGCGTAAAAAGCTGGGCCTTATTCGAGTGGAGAAGGAAGAAGATGGGACACTTGTGG
CC
AAACTTCTGGAGACCATGCATCTGACTGGTGCTGACTTCACTAACACCTTCTGTGTTCTGAGCTCCTT
T
CCGGCTGACCTGTCGGACTCAGCAGAGTTCCTGAGCAGGCTGACCTCCCAGTGTGCCTCTCTGGAAGAG
CTA
AGGCTCGCCTTCAGACCACAGATGGATCCCCGGCAGCTCTCTATGATGCTGATGCTTGCACAGTCGA
AC
CCACAGCTCTTTGCACTCATTGGTACTCAAGCCAATGTCACAAAGGAGCTAGAACGTGTGGAGCATCA
G
TCTCGGCTAGAACAGCTGAGCCCCTCTGACCTGCAGCGCAAGAACAGAGACCACTGGGAAGCCTGGCTA
CAG
GAATACAGAGACCGTCTCGACAAGGAGAAGGAGGGTGTTGGAGACACTGCTGCCTGGCAGGCAGAAC
GT
GTACGTGTCATGCGTGCCAACAACCCCAAGTACGTCCTGAGGAACTATATTGCACAGAAAGCCATTGA
A
GCTGCTGAAAATGGAGACTTTTCAGAGGTGCGGCGTGTCCTGAAGCTGCTAGAGTCTCCTTACCACAGT
GAA
GAGGAGGCCACAGGCCCTGAAGCAGTGGCAAGGAGCACTGAGGAGCAATCTTCCTACAGTAACAGGC
CA
CCCCTCTGGGCAGCAGAACTCTGTGTAACATGATCCTCATAA


Translation (667 aa):
MASVRAAVGASLAVARTRPRCVGLALPSSAPRSAWAAAMEPTPRWLAGLRFDNRALRELPVETPPPGPED
S
LATPRPVPGACFSRARPAPLRRPRLVALSEPALALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHC
Y
CGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFS
RQADGRKVLRSSIREFLCSEAMFHL
G
IPTTRAGACVTSESTVMRDVFYDGNPKYEKCTVVLRIAPTFI
RFGSFEIFKPPDEHTGRAGPSVGRDDI
R
VQLLDYVISSFYPEIQAAHTCDTDNIQRNAAFFRE
VTQRTARMVAEWQCVGFCHGVLNTDNMSIVGLTI
D
YGPFGFLD
RYDPDHICNASDNAGRYTYSKQPQVCKWNLQKLAEALEPELPLALAEAILKEEFDTEFQRH
Y
LQKMRKKLGLIRVEKEEDGTLVAKLLETMHLT
GADFTNTFCVLSSFPADLSDSAEFLSRLTSQCASLEE
L
RLAFRPQMDP
RQLSMMLMLAQSNPQLFALIGTQANVTKELERVEHQSRLEQLSPSDLQRKNRDHWEAWL
Q
EY
RDRLDKEKEGVGDTAAWQAERVRVMRANNPKYVLRNYIAQKAIEAAENGDFSEVRRVLKLLESPYHS
E
EEATGPEAVARSTEEQSSYSNRPPLWAAELCVTUSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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