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Report for CCDS27738.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27738.1 |
Public |
Mus musculus |
15 |
Selenoo |
23 |
108 |
98 |
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Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Contains selenocysteine |
Sequence IDs included in CCDS 27738.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000082439.4 |
ENSMUSP00000081020.4 |
Accepted |
alive |
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NCBI |
NM_027905.3 |
NP_082181.2 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_082181.2 |
667 |
Q9DBC0 |
667 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 27738.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also. |
Translation Exceptions: replace the symbol * (codon TGA) with U at amino acid position 665
Nucleotide Sequence (2004 nt): ATGGCCTCTGTCAGGGCCGCGGTCGGGGCCTCGCTCGCGGTTGCCCGAACCCGGCCACGGTGCGTCGGTC TCGCGCTTCCGTCGTCCGCGCCCCGGTCCGCCTGGGCTGCAGCTATGGAGCCCACGCCGCGTTGGCTGGC AGGGCTGCGCTTTGACAACCGCGCCCTGCGTGAGCTGCCGGTGGAGACGCCGCCGCCTGGGCCGGAGGAC TCCCTGGCCACCCCGCGGCCGGTGCCCGGAGCCTGCTTCAGCCGTGCGCGGCCGGCCCCGCTACGGCGGC CGCGCCTGGTGGCGCTGTCAGAGCCCGCGCTGGCCTTGCTGGGGCTCGAGGCCAGCGAGGAGGCCGAGGT CGAGGCCGAAGCTGCGCTCTTCTTCAGCGGCAATGCGCTGCTGCCGGGCACCGAGCCCGCCGCGCACTGC TACTGTGGACACCAGTTCGGTCAGTTCGCTGGGCAGTTGGGCGACGGTGCCGCCATGTACCTGGGCGAGG TGTGCACAGCGGCCGGCGAGCGCTGGGAGCTGCAGCTCAAAGGCGCCGGCCCCACGCCCTTCTCCAGACA AGCCGATGGTCGCAAAGTCCTGCGGTCAAGCATCCGTGAGTTCCTGTGCAGCGAAGCCATGTTTCACCTG GGAATCCCCACCACGAGGGCCGGGGCCTGCGTCACGTCTGAGTCTACAGTGATGCGAGACGTGTTCTATG ATGGTAATCCAAAATATGAAAAGTGCACGGTTGTGTTGCGTATAGCTCCCACTTTCATAAGATTCGGCTC CTTTGAAATTTTTAAGCCTCCTGATGAGCACACAGGGCGTGCAGGCCCCAGCGTGGGACGAGATGATATC CGAGTCCAATTGCTTGACTATGTCATCAGCTCTTTCTACCCTGAGATCCAGGCTGCCCATACCTGTGACA CGGACAACATACAGAGGAACGCGGCCTTTTTCAGAGAGGTGACACAGCGAACAGCACGGATGGTTGCTGA ATGGCAGTGTGTTGGCTTTTGCCATGGCGTGCTCAACACTGACAACATGAGCATTGTGGGGCTCACTATC GACTATGGACCCTTTGGCTTCCTGGACAGGTACGACCCTGACCATATATGTAATGCCTCTGACAATGCTG GGCGCTACACATACAGTAAGCAGCCCCAGGTATGCAAGTGGAATCTGCAGAAACTAGCTGAAGCATTGGA GCCTGAACTGCCACTTGCGCTGGCTGAGGCCATTCTAAAAGAGGAGTTTGACACTGAGTTCCAAAGGCAC TATCTACAGAAGATGCGTAAAAAGCTGGGCCTTATTCGAGTGGAGAAGGAAGAAGATGGGACACTTGTGG CCAAACTTCTGGAGACCATGCATCTGACTGGTGCTGACTTCACTAACACCTTCTGTGTTCTGAGCTCCTT TCCGGCTGACCTGTCGGACTCAGCAGAGTTCCTGAGCAGGCTGACCTCCCAGTGTGCCTCTCTGGAAGAG CTAAGGCTCGCCTTCAGACCACAGATGGATCCCCGGCAGCTCTCTATGATGCTGATGCTTGCACAGTCGA ACCCACAGCTCTTTGCACTCATTGGTACTCAAGCCAATGTCACAAAGGAGCTAGAACGTGTGGAGCATCA GTCTCGGCTAGAACAGCTGAGCCCCTCTGACCTGCAGCGCAAGAACAGAGACCACTGGGAAGCCTGGCTA CAGGAATACAGAGACCGTCTCGACAAGGAGAAGGAGGGTGTTGGAGACACTGCTGCCTGGCAGGCAGAAC GTGTACGTGTCATGCGTGCCAACAACCCCAAGTACGTCCTGAGGAACTATATTGCACAGAAAGCCATTGA AGCTGCTGAAAATGGAGACTTTTCAGAGGTGCGGCGTGTCCTGAAGCTGCTAGAGTCTCCTTACCACAGT GAAGAGGAGGCCACAGGCCCTGAAGCAGTGGCAAGGAGCACTGAGGAGCAATCTTCCTACAGTAACAGGC CACCCCTCTGGGCAGCAGAACTCTGTGTAACATGATCCTCATAA
Translation (667 aa): MASVRAAVGASLAVARTRPRCVGLALPSSAPRSAWAAAMEPTPRWLAGLRFDNRALRELPVETPPPGPED SLATPRPVPGACFSRARPAPLRRPRLVALSEPALALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHC YCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHL GIPTTRAGACVTSESTVMRDVFYDGNPKYEKCTVVLRIAPTFIRFGSFEIFKPPDEHTGRAGPSVGRDDI RVQLLDYVISSFYPEIQAAHTCDTDNIQRNAAFFREVTQRTARMVAEWQCVGFCHGVLNTDNMSIVGLTI DYGPFGFLDRYDPDHICNASDNAGRYTYSKQPQVCKWNLQKLAEALEPELPLALAEAILKEEFDTEFQRH YLQKMRKKLGLIRVEKEEDGTLVAKLLETMHLTGADFTNTFCVLSSFPADLSDSAEFLSRLTSQCASLEE LRLAFRPQMDPRQLSMMLMLAQSNPQLFALIGTQANVTKELERVEHQSRLEQLSPSDLQRKNRDHWEAWL QEYRDRLDKEKEGVGDTAAWQAERVRVMRANNPKYVLRNYIAQKAIEAAENGDFSEVRRVLKLLESPYHS EEEATGPEAVARSTEEQSSYSNRPPLWAAELCVTUSS
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