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Report for CCDS27712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27712.1 Public Mus musculus 15 Arhgap8 23 108 98 CCDS HistoryNCBI Gene:73167Re-query CCDS DB by CCDS ID:27712.1Re-query CCDS DB by GeneID:73167See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006029.10 ENSMUSP00000006029.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006029.10Link to Ensembl Protein Viewer:ENSMUSP00000006029.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006029Re-query CCDS DB by Protein ID:ENSMUSP00000006029
Original member Current member EBI ENSMUST00000168811.1 ENSMUSP00000130977.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168811.1Link to Ensembl Protein Viewer:ENSMUSP00000130977.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168811Re-query CCDS DB by Protein ID:ENSMUSP00000130977
Original member Current member EBI ENSMUST00000172307.8 ENSMUSP00000132008.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172307.8Link to Ensembl Protein Viewer:ENSMUSP00000132008.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172307Re-query CCDS DB by Protein ID:ENSMUSP00000132008
Original member Current member NCBI NM_001164627.1 NP_001158099.1 Accepted alive Link to Nucleotide Sequence:NM_001164627.1Link to Protein Sequence:NP_001158099.1Re-query CCDS DB by Nucleotide ID:NM_001164627Re-query CCDS DB by Protein ID:NP_001158099Link to BLAST:NP_001158099.1
Original member Current member NCBI NM_001164628.1 NP_001158100.1 Accepted alive Link to Nucleotide Sequence:NM_001164628.1Link to Protein Sequence:NP_001158100.1Re-query CCDS DB by Nucleotide ID:NM_001164628Re-query CCDS DB by Protein ID:NP_001158100Link to BLAST:NP_001158100.1
Original member Current member NCBI NM_001205334.1 NP_001192263.1 Accepted alive Link to Nucleotide Sequence:NM_001205334.1Link to Protein Sequence:NP_001192263.1Re-query CCDS DB by Nucleotide ID:NM_001205334Re-query CCDS DB by Protein ID:NP_001192263Link to BLAST:NP_001192263.1
Original member Current member NCBI NM_028455.4 NP_082731.2 Accepted alive Link to Nucleotide Sequence:NM_028455.4Link to Protein Sequence:NP_082731.2Re-query CCDS DB by Nucleotide ID:NM_028455Re-query CCDS DB by Protein ID:NP_082731Link to BLAST:NP_082731.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158099.1 425 Q9CXP4 425 100% 0 0
NP_001158100.1 425 Q9CXP4 425 100% 0 0
NP_001192263.1 425 Q9CXP4 425 100% 0 0
NP_082731.2 425 Q9CXP4 425 100% 0 0

Chromosomal Locations for CCDS 27712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84732951 84733029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84740708 84740795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84741893 84742024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84745769 84745855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84756338 84756436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84757020 84757130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84765673 84765746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84766311 84766388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84767101 84767229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84769997 84770100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84771781 84772077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCTGGCCTGGACCCCACACTGAGCACAAGTCACCCATTCTATGATGTGGCCAGACACGGCATCCTGC
AGGTGGCAGGGGATGACCGCCAGGGGAGACGCATCTTCACTTTCAGCTGCTGCCGGCTGCCACCCTTGCA
CCAGCTCAACCACCAGCGCCTGCTGGAGTATCTGAAGTACACACTGGACCAGCATGTGGAGAACGACTAT
ACTATTGTCTACTTTCACTATGGCCTCAGCAGCCAGAACAAACCATCCCTAGGCTGGCTCCAGAACACCT
ACAAGGAGTTTGACCGGAAGTACAAGAAGAACCTGAAGGCACTGTACGTTGTACACCCCACCAGCCTCAT
CAAAGCACTGTGGAACATCTTCAAGCCCCTCATCAGTCACAAGTTTGGGAAAAAAGTCACCTACTGCAGC
AACCTGCGTGAGCTCCGAGAACACCTTCAGTGCGACCAGCTGCTCATCCCCCCGGAAGTAGTGCGGTATG
ACGAGAAACTGCAAAACCTGCACAAAGGTCAACCGCCCCCGCCCACCAAGACACCGCCACCTCGGCCGCC
TCTGCCCACCCAGCAGTTTGGCGTCAGCCTGCAATACCTCAGAGACAAAAATCAAGGTGAACTCATCCCC
CCGGTGCTGCGTTGGACGGTGACATATCTGAGAGAAAAAGGACTGCGCACTGAGGGCCTGTTCCGGAGAT
CGGCCAGCGCCCAGACTGTCCGTCAGGTGCAGCGGCTATATGATCAAGGGAAGCCCGTGAACTTTGATGA
TTATGGAGACATGCACCTCCCAGCCGTGATCCTGAAGACATTTCTCCGAGAGCTGCCCCAGCCACTGCTG
ACCTTCCAAGCCTACGAGCAGATTCTCGGGATCACCAGTGTGGAGAGCAGCCTTCGAGTGACCCACTGCC
GCCTGATCCTGCGGAGCCTCCCAGAACACAACTATGCCGTACTCCGCTACCTCATGGGCTTCCTGCATGA
AGTGTCTCTGGAGAGCATTTCAAACAAGATGAACAGCTCTAACCTGGCGTGCGTGTTTGGATTGAACTTG
ATCTGGCCATCCCAGGGGGTGGCTTCCCTGAGCGCCCTGGTACCTCTGAACTTGTTCACAGAGCTGCTGA
TAGAGTACTATGACAAAGTCTTCAGTTGCCAGGAGGCCCCTGGGGAGCACACCCGGGATACTGTGGAAGT
ACAGCAGGCTGGCCCTGTTACCAAAGAATTTATGAAGACGGGCACTCCCCGGGCCTCACCATACCTGTCC
CGCCTCCGTATCTCCTGA

Translation (425 aa):
MAGLDPTLSTSHPFYDVARHGILQVAGDDRQGRRIFTFSCCRLPPLHQLNHQRLLEYLKYTLDQHVENDY
TIVYFHYGLSSQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALWNIFKPLISHKFGKKVTYCS
NLRELREHLQCDQLLIPPEVVRYDEKLQNLHKGQPPPPTKTPPPRPPLPTQQFGVSLQYLRDKNQGELIP
PVLRWTVTYLREKGLRTEGLFRRSASAQTVRQVQRLYDQGKPVNFDDYGDMHLPAVILKTFLRELPQPLL
TFQAYEQILGITSVESSLRVTHCRLILRSLPEHNYAVLRYLMGFLHEVSLESISNKMNSSNLACVFGLNL
IWPSQGVASLSALVPLNLFTELLIEYYDKVFSCQEAPGEHTRDTVEVQQAGPVTKEFMKTGTPRASPYLS
RLRIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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