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Report for CCDS27661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27661.1 Public Mus musculus 15 Mief1 23 108 98 CCDS HistoryNCBI Gene:239555Re-query CCDS DB by CCDS ID:27661.1Re-query CCDS DB by GeneID:239555See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023048.11 ENSMUSP00000023048.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023048.11Link to Ensembl Protein Viewer:ENSMUSP00000023048.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023048Re-query CCDS DB by Protein ID:ENSMUSP00000023048
Original member Current member EBI ENSMUST00000166030.1 ENSMUSP00000129209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166030.1Link to Ensembl Protein Viewer:ENSMUSP00000129209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166030Re-query CCDS DB by Protein ID:ENSMUSP00000129209
Original member Current member EBI ENSMUST00000229138.1 ENSMUSP00000154875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229138.1Link to Ensembl Protein Viewer:ENSMUSP00000154875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229138Re-query CCDS DB by Protein ID:ENSMUSP00000154875
Original member NCBI NM_001357659.1 NP_001344588.1 Updated not alive Link to Nucleotide Sequence:NM_001357659.1Link to Protein Sequence:NP_001344588.1Re-query CCDS DB by Nucleotide ID:NM_001357659Re-query CCDS DB by Protein ID:NP_001344588
Current member NCBI NM_001357659.2 NP_001344588.1 Accepted alive Link to Nucleotide Sequence:NM_001357659.2Link to Protein Sequence:NP_001344588.1Re-query CCDS DB by Nucleotide ID:NM_001357659Re-query CCDS DB by Protein ID:NP_001344588Link to BLAST:NP_001344588.1
Original member NCBI NM_178719.5 NP_848834.2 Updated not alive Link to Nucleotide Sequence:NM_178719.5Link to Protein Sequence:NP_848834.2Re-query CCDS DB by Nucleotide ID:NM_178719Re-query CCDS DB by Protein ID:NP_848834
Current member NCBI NM_178719.6 NP_848834.2 Accepted alive Link to Nucleotide Sequence:NM_178719.6Link to Protein Sequence:NP_848834.2Re-query CCDS DB by Nucleotide ID:NM_178719Re-query CCDS DB by Protein ID:NP_848834Link to BLAST:NP_848834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344588.1 463 Q8BGV8 463 100% 0 0
NP_848834.2 463 Q8BGV8 463 100% 0 0

Chromosomal Locations for CCDS 27661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 80246744 80246887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80247874 80248051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80248241 80248503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80249329 80250135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCAGGCGCTGGTGAGCGCAAAGGGAAGAAGGATGACAATGGCATTGGTACGGCCATCGATTTTGTGC
TCTCCAATGCCCGGCTGGTGCTGGGTGTGGGTGGAGCAGCTATGTTGGGCATTGCCACACTGGCAGTTAA
GCGGATGTATGACCGGGCAATCAGTGCCCCTACCAGCCCTACCCGCCTAAGCCATTCAGGGAAGAGGAGC
TGGGAGGAGCCAAACTGGATGGGCTCTCCTCGCCTATTGAACAAGGACATGAAGGCAGGCCTGAGCCGGT
CCCTGCAGACCCTTCCCACAGACTCTTCTGCCTTTGACACAGATACATTCTGCCCACCCCGGCCCAAACC
ATTGGCCAGGAGGGGCCAGGTAGACTTGAAGAAGTCACGACTCCGCATGTCCCTGCAGGAGAAACTTCTT
TCTTACTACCGGAACCGGGCAGCCATCCCTGCTGGAGAGCAGGCTCGGGCCAAGCAAGCTGCGGTGGACA
TATGTGCTGAGCTCCGGAGCTTCCTGCGGGCCAAGCTGCCTGATATGCCACTTCGGGACATGTACTTGAG
TGGCAGCCTCTATGATGATCTGCAGGTGGTGACGGCTGACCATATCCAACTCATTGTCCCCCTTGTGCTG
GAGCAGAACCTGTGGTCATGCATACCTGGGGAGGACACCATCATGAATGTCCCTGGTTTCTTCCTGGTTC
GTCGTGAGAACCCAGAGTACTTTCCTCGTGGTAGCAGTTATTGGGACCGATGTGTTGTAGGTGGCTACCT
CTCCCCAAAGACAGTGGCAGACACCTTTGAGAAAGTGGTGGCAGGCTCCATCAACTGGCCAGCCATAGGG
TCCCTCTTAGACTATGTGATCCGACCAGCACCACCCCCAGAGGCCCTGACACTAGAAGTTCAGTATGAGA
AGGACAAACATCTTGTCATTGACTTCCTGCCATCAGTAACCCTTGGTGACACTGTCTTGGTGGCCAGACC
ACACCGGTTAGCTCAGTATGACAACCTGTGGCGGCTGAGCCTTCGCCCTGCTGAGACAGCACGCTTACGG
GCTTTGGACCAGGCGGACTCCGGCTGCCGGTCTCTTTGCCTCAAGATCCTCAAGGCCATATGCAAGTCCA
CTCCAGCTCTGGGCCACCTCACTGCCAGCCAGCTAACCAACGTCATCCTCCACTTGGCCCAGGAGGAGGC
TGACTGGTCTCCAGACATGTTGGCTGACCGGTTTCTACAGGCCCTGAGGGGACTCATCAGCTACTTGGAG
GCTGGGGTCTTGCCCAGTGCCCTGAACCCTAAGGTGAACCTATTTGCAGAGCTCACCCCTCAAGAAATAG
ACGAGTTGGGATATACCCTCTACTGCTCGCTGTCTGAGCCGGAGGTGCTGCTGCAGACGTAG

Translation (463 aa):
MAGAGERKGKKDDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTSPTRLSHSGKRS
WEEPNWMGSPRLLNKDMKAGLSRSLQTLPTDSSAFDTDTFCPPRPKPLARRGQVDLKKSRLRMSLQEKLL
SYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPDMPLRDMYLSGSLYDDLQVVTADHIQLIVPLVL
EQNLWSCIPGEDTIMNVPGFFLVRRENPEYFPRGSSYWDRCVVGGYLSPKTVADTFEKVVAGSINWPAIG
SLLDYVIRPAPPPEALTLEVQYEKDKHLVIDFLPSVTLGDTVLVARPHRLAQYDNLWRLSLRPAETARLR
ALDQADSGCRSLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRGLISYLE
AGVLPSALNPKVNLFAELTPQEIDELGYTLYCSLSEPEVLLQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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