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Report for CCDS27653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27653.1 Public Mus musculus 15 Nptxr 23 108 98 CCDS HistoryNCBI Gene:73340Re-query CCDS DB by CCDS ID:27653.1Re-query CCDS DB by GeneID:73340See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 27653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023057.9 ENSMUSP00000023057.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023057.9Link to Ensembl Protein Viewer:ENSMUSP00000023057.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023057Re-query CCDS DB by Protein ID:ENSMUSP00000023057
Original member Current member EBI ENSMUST00000175858.8 ENSMUSP00000135855.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175858.8Link to Ensembl Protein Viewer:ENSMUSP00000135855.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000175858Re-query CCDS DB by Protein ID:ENSMUSP00000135855
Original member Current member NCBI NM_030689.4 NP_109614.2 Accepted alive Link to Nucleotide Sequence:NM_030689.4Link to Protein Sequence:NP_109614.2Re-query CCDS DB by Nucleotide ID:NM_030689Re-query CCDS DB by Protein ID:NP_109614Link to BLAST:NP_109614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109614.2 493 Q99J85 493 99.1886% 0 4

Chromosomal Locations for CCDS 27653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79789692 79789916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79790266 79790445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79792603 79792850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79794256 79794475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79803975 79804583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (1482 nt):
CTGAAGTTCCTGGCCGTGCTGCTGGCCGCGGGCATGCTGGCGTTCCTCGGTGCCGTCATCTGCATCATCG
CCAGCGTGCCCCTGGCGGCCAGCCCCGCTCGCGCGCTGCCCGGCGGCACCGACAACGCCTCGGCCGCCTC
GGCCGCCGGTGGCTCGGGTCCGCAGCGCAGCCTGAGCGCCCTGCACAGCGCAGGCGGCTCGGCCGGGCCC
TCGGTGTTGCCCGGGGAGCCCGCGGCCAGCGTCTTCCCGCCGCCGCCCGTGCCGCTGCTCAGTCGCTTCC
TCTGTACGCCGCTGGCCGCCGCCTGCCCGTCGGGGGCCGAGCAGGGGGACGCGGCAGGCGAGCGCGCAGA
GCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCGC
GCAGACCGGGACACCATCCGCGAGCTCACCGGCAAGCTGGGCCGCTGTGAGAGCGGCCTGCCGCGCGGCC
TCCAGGACGCCGGGCCCCGCCGCGACACCATGGCCGACGGCGCCTGGGACTCACCTGCGCTGCTGCTGGA
GCTGGAGGACGCGGTGCGCGCGCTGCGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGG
AACATCTCCTCGGCGCCAGCTCCAGCCATGCCCACCGCCCTGCACTCCAAGATGGACGAACTAGAAGGCC
AGCTGCTGGCCAAGGTGCTGGCGCTGGAGAAGGAGCGAGCCGCCCTCAGTCACGGGAGCCACCAGCAACG
ACAGGAAGTGGAGAAGGAGCTGAATGCCCTGCAGGGTCGCGTGGCCGAGCTGGAGCACGGGTCCTCGGCC
TACAGTCCCCCTGATGCCTTCAAGGTCAGCATCCCCATCCGCAACAACTACATGTACGCCCGCGTGCGCA
AGGCGCTGCCGGAACTCTACGCCTTCACTGCCTGCATGTGGCTGCGCTCCAGGTCAGGTGGCTCCGGCCA
GGGCACCCCCTTCTCCTACTCGGTGCCCGGGCAGGCCAATGAGATCGTGCTTCTGGAGGCCGGCCTTGAG
CCAATGGAGCTGCTGATCAACGACAAGGTGGCCCAGCTGCCCCTGAGCCTGAAAGACAGCAACTGGCACC
ATATCTGCATCTCCTGGACTACAAGGGATGGGCTGTGGTCTGCATACCAGGACGGAGAACTGCGGGGTTC
TGGCGAGAACCTAGCAGCCTGGCACCCCATCAAGCCACACGGCATCCTTATCCTGGGCCAAGAGCAGGAT
ACCTTGGGAGGCCGATTTGACGCCACACAGGCCTTCGTTGGTGACATTGCACAGTTCAACCTGTGGGACC
ACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCC
CTGGGAAGATAAGCTGGTAGAGGCCTTTGGAGGTGCGAAGAAGGCCGCCTTTGATGTGTGCAAGGGGAGG
GCAAAGGCATGA

Translation (493 aa):
MKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGTDNASAASAAGGSGPQRSLSALHSAGGSAGP
SVLPGEPAASVFPPPPVPLLSRFLCTPLAAACPSGAEQGDAAGERAELLLLQSTAEQLRQTALQQEARIR
ADRDTIRELTGKLGRCESGLPRGLQDAGPRRDTMADGAWDSPALLLELEDAVRALRDRIERIEQELPARG
NISSAPAPAMPTALHSKMDELEGQLLAKVLALEKERAALSHGSHQQRQEVEKELNALQGRVAELEHGSSA
YSPPDAFKVSIPIRNNYMYARVRKALPELYAFTACMWLRSRSGGSGQGTPFSYSVPGQANEIVLLEAGLE
PMELLINDKVAQLPLSLKDSNWHHICISWTTRDGLWSAYQDGELRGSGENLAAWHPIKPHGILILGQEQD
TLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGMANCTGPLMGNVLPWEDKLVEAFGGAKKAAFDVCKGR
AKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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