NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27579.1 Public Mus musculus 15 Vps28 23 108 98 CCDS HistoryNCBI Gene:66914Re-query CCDS DB by CCDS ID:27579.1Re-query CCDS DB by GeneID:66914See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078803.4 ENSMUSP00000077856.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078803.4Link to Ensembl Protein Viewer:ENSMUSP00000077856.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000078803Re-query CCDS DB by Protein ID:ENSMUSP00000077856
Original member Current member NCBI NM_025842.4 NP_080118.1 Accepted alive Link to Nucleotide Sequence:NM_025842.4Link to Protein Sequence:NP_080118.1Re-query CCDS DB by Nucleotide ID:NM_025842Re-query CCDS DB by Protein ID:NP_080118Link to BLAST:NP_080118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080118.1 221 Q9D1C8 221 100% 0 0

Chromosomal Locations for CCDS 27579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76622233 76622350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76622471 76622562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76622655 76622708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76623171 76623272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76623389 76623494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76624086 76624175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76624448 76624485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76624592 76624620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76625134 76625170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTTCCACGGGATCCCAGCTACTCCTGGTGTTGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAG
TAAAGCTCTACAAGAATGCTCGGGAGCGGGAGAAGTATGACAACATGGCAGAGCTCTTTGCCGTGGTGAA
GACGATGCAGGCCCTGGAGAAGGCGTACATCAAGGACTGTGTCACCCCCAATGAGTACACTGCAGCCTGC
TCCAGGCTCCTGGTCCAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGAGATCAGCTCCATTGATG
AATTTTGCCGAAAGTTCAGACTGGACTGCCCACTTGCTATGGAGAGGATCAAAGAGGACCGGCCCATCAC
TATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTCGCTCTTCATTACAGTCATG
GACAAGCTGCGTCTGGAGATCCGTGCCATGGACGAGATTCAGCCAGACCTGCGGGAGCTGATGGAGACAA
TGCACAGAATGAGCCACCTGCCTCCAGACTTCGAGGGCCGCCAGACAGTCAGCCAGTGGCTGCAGACCCT
GAGTGGTATGTCGGCCTCTGACGAGCTGGATGACTCTCAAGTTCGCCAGATGCTCTTCGATCTGGAGTCC
GCTTACAACGCCTTTAACCGCTTCCTACACGCCTAA

Translation (221 aa):
MFHGIPATPGVGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAAC
SRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVM
DKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLES
AYNAFNRFLHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH