NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27478.1 Public Mus musculus 15 Mtbp 23 108 98 CCDS HistoryNCBI Gene:105837Re-query CCDS DB by CCDS ID:27478.1Re-query CCDS DB by GeneID:105837See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022998.13 ENSMUSP00000022998.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022998.13Link to Ensembl Protein Viewer:ENSMUSP00000022998.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022998Re-query CCDS DB by Protein ID:ENSMUSP00000022998
Original member NCBI NM_134092.3 NP_598853.3 Updated not alive Link to Nucleotide Sequence:NM_134092.3Link to Protein Sequence:NP_598853.3Re-query CCDS DB by Nucleotide ID:NM_134092Re-query CCDS DB by Protein ID:NP_598853
Current member NCBI NM_134092.4 NP_598853.3 Accepted alive Link to Nucleotide Sequence:NM_134092.4Link to Protein Sequence:NP_598853.3Re-query CCDS DB by Nucleotide ID:NM_134092Re-query CCDS DB by Protein ID:NP_598853Link to BLAST:NP_598853.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598853.3 894 Q8BJS8-1 894 100% 0 0

Chromosomal Locations for CCDS 27478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55557620 55557737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55558501 55558581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55562703 55562776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55562937 55563088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55564613 55564671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55566194 55566338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55567178 55567295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55569046 55569159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55571295 55571389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55572896 55572968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55577448 55577565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55586311 55586484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55588656 55588763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55597342 55597503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55603184 55603301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55606644 55606799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55610938 55611033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55617482 55617748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55619638 55619875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55620623 55620736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55625391 55625456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55626138 55626176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGGATCGGTACTTGCTGCTGGTCACCTGGAGGGAAGGGAAGTTTCGATCCGTGGCGGGTGGGGAGATCG
AGCCTGGCACTGAGGCGACATCCCTGGAGAGCACCGACAAACAGCCCGATTTGACCGCAACCAATATTTA
TCACCTCTTGAAGAGAAGCATCAGCGATTCAATCCATCCAGATGACAGTACATTCCCTGCTTGTTCAGTG
GGTGGCACACCTCATTCCAGGAAGTGGTTCTTTGCGGTGCAAGCAATATGCGGATTTTACCAGTTTTGTA
GTTCTGATTGGCAAGAGATACATTTTGATGCTGAAAAAGATAAAATCGAAGATGTTCTTCAAGCAAATAT
AGAAGAATGTCAGAGTGCTGTTGAGTGTTTTGAAGAAGATGACAGTAATAGCAGGGAATCCTTACCCTTG
GCTGACCTATATGAAGAATCAGCAGAAAATTTGCATCAGTTATCAGACAAGCTTCCCGCTCCTGGTAGAG
CAATGATAGACATAATACTGTTGCCTTCTGACAAAGACCCTCCTAAGCTAAAAGAGTGCTTGCCCATTGT
AGGGGCCTTGAAACATCTGAAGGAATGGCATTCAGCAAAAGTTATCATAGCAGGAAGTTACTGTGAGATA
AATTGTCAGAAAATTGCTGAATACCTTTCAGCTAGTGTTGTGCCTTTAGAAGAATTCAGAAATGCCATTG
ATCCGAGGGAACTGTGGCGGGGAGAGATTCAGATGCGGGAACGAAAGTTTGGATTTGAAATTAGTTTTCC
TGAATTTTGTTTAAAAGGAGTTACGCCTACGAATGTTAGTGCGTATAATTTAAATACCTGCTTCCTTGCC
AAGAAGATAGCATCTTCTAAGGTTTTCCATTATTATGGTCCTGCTTTGGAATTTGTGCAGATGATAAAAC
TATCAGATCTTCCCTCCTGTTACATGTCGGATATCGAGTTTGAGTTAGAGGTGACTGGGCACTGCACGAG
GCAGAATTCCATGCTGCTGTTGGAACAGATCTCTTCCCTGTGTGGCAAGGTTGGTGCTCTCTTTGTGCTG
CCGTGTACTGTTAGCAATGTACTCATCCCACCTCCCAGCCAACTGGCCTCAAGAAAGTGGAAGGAATACA
TGGCTAAGAAGCCCAAGACCATCAGTGTTCCCGATGTTGCCGTGAAGGGAGAGTTTTCTGGCTATCATCT
CCTGCTGCAAGGTATGGGCAAGAGAAAATGCAGAGCCACCCTGCTGCACTCGGCCAGCCAGATCAATGGC
TCGTTTGCACTCAGTGTCATTCATGGGAAGATGAAAACAAAGGCAGGAGAAGCCAGACCGAGTTTCCCCT
TTGACTTCTCGTCACTCCCAAGGTTTTCGGAGGAGCAGGTTTTACAGAGAGAGAAACAATTAGCCAGCTT
TCAAGTTTTGGCTTTGAAAGAATGCCTGAAAAGAAGAAAGGCTGCAAACCAGCCCGAAGCCTTTTCTGCC
GATGAACTCAAAAGTCTGTTGGCACTCACGAGGGAGCGCTTCCTAGGTCACTTTGATGTTCTCCCCACTG
AAGCAGCTTTAGCACAAACAGACACCGTGAAAGCTGCCGGCGTGGTAAATGATGACGGTACAGTTGAACC
TTATTCTTCAAGCCTAATGGAAACCAATCCTCTGGAATGGCCAGAAAGACATGTTCTTCAGAATTTAGAA
ACTTCTGAAAAAGCTAAACAAAAAATGAGAACTGGCTCATTACCGCGTTCGTCTGAACAGTTGCTGGGCC
ATAAAGAGGGTCCCCGGGACTCACTCACATTACTGGATGCTAAGGAGCTGCTGAAGTATTTCACCTCGGA
TGGGTTACCAGTCGGAGATCTTCAGCCGTTACACATTCAACGGGGGGAAAAGCCTTTTGTTTTGACACCA
GAGCTTAGTCCTGGAAAACTTCAGGTCTTACCTTTTGAAAAAGCCTCGGAATGCCATTACCACGGGATTG
AATATTGCCTGGATGACCAAAAAGCTTTAGAAAGAGATGGGGGATTTTCTGAACTTCAGTCGCGCCTTAT
TCGTTACGAGACGCAGACCACCTGCACCAGAGACAGTTTTCCAGTCCCCACCGTGCTGAGCCCTCTTCCA
TCCCCTGCAGTTCTGTCAGAGCCTCAGAGTGTCCCCGAAGGAGAAGCACTGCAAGGCGAACTGAGGACTG
AAGTTTCTGGATTGAAGCGGAGATCTAAAGACCCCAGCTGCCTGTACCCCCAGAAAAGACTTACGAGATC
AGAAAGTTCTGATTGTTTGCCTTCCCAAGCGAGTTGCAATAGTAATCATCACCATCACACAGGGAAACCC
AGGAAGCCTCAGGCAGAGCGCTGTGTGTCAGGGCTTCCTCTGCCTGGCCGGGAAGCTTCCAAAGATACCT
CAAAGACCAGTTCAGGACAAAAACGAGCACACGAATCAAAATCATCAAAGCAAATGAAGGAATCACGGTC
CCAGAAACACACACGGATGCTGAAGGAGGTGGTAAAAGACACCTTGAAGAGGCACCACATCACGGAGGCC
CATGAGAGCTTCACGGCCTGCAGCCAGAGACTCTTCGACATCTCCAAGTTCTACCTGAAGGATCTGAAAA
CATCAAGGGGTCTCTTTGAAGAAATGAAGAAAACAGCCAACAACAATGTGGTGCAGGTGATCGAATGGGT
GGTAGAAAAGATGAGCAAGAAATAA

Translation (894 aa):
MDRYLLLVTWREGKFRSVAGGEIEPGTEATSLESTDKQPDLTATNIYHLLKRSISDSIHPDDSTFPACSV
GGTPHSRKWFFAVQAICGFYQFCSSDWQEIHFDAEKDKIEDVLQANIEECQSAVECFEEDDSNSRESLPL
ADLYEESAENLHQLSDKLPAPGRAMIDIILLPSDKDPPKLKECLPIVGALKHLKEWHSAKVIIAGSYCEI
NCQKIAEYLSASVVPLEEFRNAIDPRELWRGEIQMRERKFGFEISFPEFCLKGVTPTNVSAYNLNTCFLA
KKIASSKVFHYYGPALEFVQMIKLSDLPSCYMSDIEFELEVTGHCTRQNSMLLLEQISSLCGKVGALFVL
PCTVSNVLIPPPSQLASRKWKEYMAKKPKTISVPDVAVKGEFSGYHLLLQGMGKRKCRATLLHSASQING
SFALSVIHGKMKTKAGEARPSFPFDFSSLPRFSEEQVLQREKQLASFQVLALKECLKRRKAANQPEAFSA
DELKSLLALTRERFLGHFDVLPTEAALAQTDTVKAAGVVNDDGTVEPYSSSLMETNPLEWPERHVLQNLE
TSEKAKQKMRTGSLPRSSEQLLGHKEGPRDSLTLLDAKELLKYFTSDGLPVGDLQPLHIQRGEKPFVLTP
ELSPGKLQVLPFEKASECHYHGIEYCLDDQKALERDGGFSELQSRLIRYETQTTCTRDSFPVPTVLSPLP
SPAVLSEPQSVPEGEALQGELRTEVSGLKRRSKDPSCLYPQKRLTRSESSDCLPSQASCNSNHHHHTGKP
RKPQAERCVSGLPLPGREASKDTSKTSSGQKRAHESKSSKQMKESRSQKHTRMLKEVVKDTLKRHHITEA
HESFTACSQRLFDISKFYLKDLKTSRGLFEEMKKTANNNVVQVIEWVVEKMSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH