NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27466.1 Public Mus musculus 15 Ext1 23 108 98 CCDS HistoryNCBI Gene:14042Re-query CCDS DB by CCDS ID:27466.1Re-query CCDS DB by GeneID:14042See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077273.8 ENSMUSP00000076505.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077273.8Link to Ensembl Protein Viewer:ENSMUSP00000076505.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077273Re-query CCDS DB by Protein ID:ENSMUSP00000076505
Original member Current member NCBI NM_010162.2 NP_034292.2 Accepted alive Link to Nucleotide Sequence:NM_010162.2Link to Protein Sequence:NP_034292.2Re-query CCDS DB by Nucleotide ID:NM_010162Re-query CCDS DB by Protein ID:NP_034292Link to BLAST:NP_034292.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034292.2 746 P97464 746 100% 0 0

Chromosomal Locations for CCDS 27466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 53068664 53068849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53073293 53073464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53075769 53075929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53083085 53083174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53088055 53088150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53089931 53090049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53092283 53092415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53101685 53101804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53106027 53106134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53107478 53107571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53344402 53345363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGCAGGCCAAAAAACGCTATTTCATCCTGCTCTCAGCTGGCTCTTGTCTCGCCCTTTTGTTTTATTTTG
GAGGCGTGCAGTTTAGGGCATCGAGGAGCCACAGCCGGAGAGAAGAGCACAGTGGTCGGAATGGCTTGCA
CCAGCCCAGTCCGGATCATTTCTGGCCCCGCTTCCCGGACGCTCTGCGCCCTTTCTTTCCTTGGGATCAA
TTGGAAAACGAGGATTCCAGCGTGCACATTTCCCCCCGGCAGAAGCGAGACGCCAACTCGAGCATCTACA
AAGGCAAGAAGTGCCGCATGGAGTCCTGCTTCGATTTCACCCTTTGCAAGAAAAACGGCTTCAAAGTCTA
CGTGTACCCGCAGCAGAAAGGGGAGAAAATCGCCGAAAGTTACCAAAACATTCTAGCGGCCATCGAGGGC
TCCAGGTTCTACACCTCGGACCCCAGCCAGGCGTGCCTCTTTGTCTTGAGTCTGGATACTTTAGACAGAG
ACCAGTTATCACCTCAGTATGTGCACAATTTGAGATCCAAAGTGCAGAGTCTCCACTTGTGGAACAATGG
TAGGAATCATTTAATTTTTAATTTATATTCTGGCACTTGGCCTGACTACACTGAGGACGTGGGGTTTGAC
ATCGGCCAGGCGATGCTGGCCAAAGCCAGCATCAGTACTGAAAACTTCCGACCAAACTTTGATGTTTCTA
TTCCCCTCTTTTCTAAGGATCATCCCAGGACAGGAGGGGAGAGGGGGTTTTTGAAATTTAACACCATCCC
TCCTCTCAGGAAGTACATGCTGGTATTCAAGGGGAAGCGGTACCTGACAGGGATAGGGTCAGACACCAGG
AATGCCTTATATCACGTCCATAACGGGGAGGACGTCTTGCTCCTCACCACCTGCAAGCATGGCAAAGACT
GGCAAAAGCACAAGGATTCTCGCTGTGACAGAGACAACACCGAGTATGAGAAATATGATTATCGGGAAAT
GCTGCACAATGCCACTTTCTGTCTGGTTCCTCGTGGTCGCAGGCTTGGGTCCTTCAGATTCCTGGAGGCT
TTGCAGGCTGCCTGTGTCCCTGTAATGCTCAGCAACGGATGGGAGTTGCCATTCTCCGAAGTGATTAATT
GGAACCAAGCTGCCGTCATAGGCGATGAGAGATTGCTATTACAGATTCCTTCTACAATCAGGTCTATTCA
TCAGGATAAAATCCTAGCACTTAGACAGCAGACACAGTTCTTGTGGGAGGCTTATTTTTCTTCAGTTGAG
AAGATTGTATTAACTACACTAGAGATTATTCAGGACAGAATATTCAAGCACATATCACGTAACAGTTTAA
TATGGAACAAACATCCTGGAGGATTGTTCGTCCTACCGCAGTATTCATCTTACCTGGGAGATTTCCCTTA
CTACTATGCTAATTTAGGTTTAAAGCCCCCCTCCAAATTCACTGCAGTCATCCATGCTGTGACTCCCCTG
GTCTCTCAGTCCCAGCCAGTGTTGAAGCTTCTTGTGGCTGCAGCCAAATCCCAGTACTGTGCGCAGATCA
TAGTTCTGTGGAATTGTGACAAGCCTCTACCAGCCAAACATCGCTGGCCTGCCACTGCCGTGCCTGTCAT
CGTCATTGAAGGAGAAAGCAAGGTTATGAGCAGCCGGTTTCTGCCCTATGACAACATCATCACTGATGCT
GTGCTCAGCCTGGATGAGGACACTGTGCTTTCAACTACGGAAGTGGATTTTGCCTTCACCGTATGGCAGA
GCTTCCCAGAGAGGATTGTGGGATATCCTGCTCGCAGTCATTTCTGGGATAACTCAAAGGAGCGGTGGGG
ATATACATCCAAGTGGACGAATGACTACTCCATGGTGTTGACAGGAGCTGCTATCTACCACAAATATTAT
CACTACCTGTATTCCCATTACCTGCCAGCCAGCCTGAAGAACATGGTAGACCAACTGGCCAACTGTGAGG
ACATTCTCATGAATTTCCTGGTGTCTGCTGTGACAAAATTGCCTCCAATCAAAGTGACCCAGAAGAAACA
GTATAAGGAGACAATGATGGGACAGACTTCCCGAGCATCCCGCTGGGCCGACCCTGACCACTTTGCCCAG
CGACAGAGCTGCATGAATACATTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCATTCTCAGATGAGGC
TGGACCCGGTCCTCTTTAAAGACCAAGTCTCAATTCTGAGGAAGAAATACAGAGACATTGAACGACTTTG
A

Translation (746 aa):
MQAKKRYFILLSAGSCLALLFYFGGVQFRASRSHSRREEHSGRNGLHQPSPDHFWPRFPDALRPFFPWDQ
LENEDSSVHISPRQKRDANSSIYKGKKCRMESCFDFTLCKKNGFKVYVYPQQKGEKIAESYQNILAAIEG
SRFYTSDPSQACLFVLSLDTLDRDQLSPQYVHNLRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFD
IGQAMLAKASISTENFRPNFDVSIPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTR
NALYHVHNGEDVLLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEA
LQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVE
KIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVTPL
VSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVIVIEGESKVMSSRFLPYDNIITDA
VLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYY
HYLYSHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQ
RQSCMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH