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Report for CCDS27460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27460.1 Public Mus musculus 15 Trps1 23 108 98 CCDS HistoryNCBI Gene:83925Re-query CCDS DB by CCDS ID:27460.1Re-query CCDS DB by GeneID:83925See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077935.5 ENSMUSP00000077089.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077935.5Link to Ensembl Protein Viewer:ENSMUSP00000077089.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077935Re-query CCDS DB by Protein ID:ENSMUSP00000077089
Original member Current member EBI ENSMUST00000165201.8 ENSMUSP00000129779.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165201.8Link to Ensembl Protein Viewer:ENSMUSP00000129779.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165201Re-query CCDS DB by Protein ID:ENSMUSP00000129779
Original member Current member NCBI NM_032000.2 NP_114389.2 Accepted alive Link to Nucleotide Sequence:NM_032000.2Link to Protein Sequence:NP_114389.2Re-query CCDS DB by Nucleotide ID:NM_032000Re-query CCDS DB by Protein ID:NP_114389Link to BLAST:NP_114389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114389.2 1281 Q925H1 1281 99.7658% 0 3

Chromosomal Locations for CCDS 27460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 50660675 50661736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50664687 50664809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50822105 50822708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50830829 50831958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50846014 50846940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3846 nt):
ATGGTCCGGAAAAAGAACCCCCCTCTGAGAAACGTTGCTAGTGAAGGCGAGGGTCAAACCCTGGAGCCAA
CAGCTACAGAGAGCAAGGTATCTGGGAAGAACAAAGAATTGTCTGCAGATCAGATGTCAGAAAATACAGA
TCAGAGTGATGTTGCAGAGTTGAACTCGAAGGAGGAACACAGCACGCATGGCCAAGAGCCATCTTCCAGC
GGTAAGAAGGACTTGCAAATCTCAGGCCTGAGTGAGAAGGCTGGCTTCAATTATGAAAGCCCCAGTAAGG
GAGGGAGCCTTGTCTCCTTCCCACATGATGAGGTAACAGACAGAAATATGTTGGCTTTCTCATCTCCAGC
TGCTGGGGGAGTCTGCGAGCCCTTGAAGTCTCCTCAAAGAGCAGAGGCAGATGACCCTCAAGATATGGCC
TGCACCCCATCAGGGGATTCATTGGAGACAAAGGAAGAGCATAAAATGTCACCAAAGGCCACTGAGGAAA
CAGGGCCAGTGCAGAGTGGTCAAGCCAATTGTCAAGGTTTGAGTCCAGTTTCCGTGGCCTCAAAAAACCC
ACAAGTGCCTTCAGATGGGGGTGTCAGACTGAGTAAACCCAAAGGTGACTTACTGGTGAATGACAACCCA
GACCCGGCACCTCTGTCTCCAGAGCTTCAGGACTTTAAATGCAATATCTGTGGATACGGTTACTATGGCA
ATGACCCCACAGATCTGATTAAGCACTTCCGAAAGTATCACTTAGGACTGCATAATCGCACCAGGCAGGA
TGCTGAGCTGGACAGCAAAATCTTGGCCCTTCATAACATGGTGCAGTTCAGCCATTCCAAAGACTTCCAG
AAGGTCAACCGTTCTGTGCTTTCTGGCGTGCTGCAGGATATCAGCTCTTCACGGCCTGCTTTACTAAACG
GAACCTATGATGTACAGGTCACTTCAGGAGGAACTTTCATTGGCATTGGACGGAAAACTCCAGATTGCCA
AGGCAACACCAAGTATTTCCGCTGCAAATTCTGCAATTTCACTTATATGGGAAACTCCTCAACTGAACTA
GAGCAACATTTTCTTCAGACGCACCCGAATAAAATCAAAGTGTCTCTCCCGTCCTCCGAGGGTGTGAAAC
CTTCAGAGAAAAACTCTAACAAATCCATCCCTGCGCTTCGAGCCAGTGACTCTGGGGATGTGGGAAAGTG
GCAGGACAAAATGACAGTCAAAGCTGGAGATGACACCCCTGTCGGCTACTCAGTGCCCATCAAGCCCCTC
GATTCCTCACGACAAAATGGTACAGAGGCCACCAGTTATTACTGGTGTAAATTTTGTAGTTTCAGCTGTG
AGTCATCCAGCTCCCTTAAGCTGCTAGAACATTATGGCAAGCAGCACGGAGCAGTGCAGTCGGGCGGCCT
TAATCCAGAGTTGAATGACAAGCTTCCCAGGGGCTCTGTCATTAATCAGAATGATCTAGCCAAAAGTGTA
GAAGGAGAGCCATTGACCAAGCCAGAAAAGGGCTTGAGTGGGGCTAAAAAGAAGGACTTCCCCAGCAAGG
GAGCAGAGGATAATATGGTAACGAGCTATAACTGTCAGTTCTGTGACTTTAGATATTCCAAAAGCCATGG
CCCTGATGTGATTGTAGTGGGTCCACTTCTCCGTCATTATCAGCAACTCCATAACATCCACAAGTGTACC
ATTAAGCACTGTCCATTCTGTCCCAGAGGCCTTTGCAGCCCAGAAAAGCACCTTGGAGAGATTACTTATC
CGTTTGCTTGTAGAAAAAGTAATTGTTCCCACTGTGCACTGTTGCTGTTGCACTTGTCTCCTGGGGTGGC
CGGAAGTTCGAGAGTCAAACACCAATGCCACCAGTGTTCCTTCTCTACCCCCGATGTAGATGTGCTCCTC
TTTCACTATGAGACCGTGCATGAGTCCCAAGCATCGGATGTCAAACAGGAGGCCAACCACCTGCTAGGAT
CTGACGGGCAGCAGGCTGTCAGGGACAGCAAGGAGCACTCGTGCACCAAATGCGATTTTATAACCCAGGT
GGAAGAAGAGATCTCGAGACACTACAGGAGAGCACACAGCTGCTATAAATGTCGTCAGTGCAGTTTCACA
GCTGCTGACACTCAGTCACTATTGGAGCACTTCAACACAGTTCACTGCCAGGAACAGGAAATCACTACTG
CTAATGGCGAAGAGGGTGGCCATGCCATACCCACCATCAAAGAAGAGCCCAAAATTGACCTCAAGGTCTA
CAGTCTGCTAAACCCAGACTCTAAAATGGGAGAAACAGTTCCCGAGAGCATAGTCAAGAGAGAGAAACTT
GATGACAAGGAAGGGCTGAAAGATAAAATCTGGACTGAGAGTTCAACTGATGACCTTCGTGGTGTGGCTT
GGAGAGGGGCAGACATCCTACGGGGTAGTCCATCCTACACTCAAGCAAGCTTAGGGGTCTTGACGCCTGT
GTCCAGCTCCCAAGAGCAGACAAAGACTCTGAGGGACAGCCCCAATGTTGAAGCTGCCCACCTGGCACGA
CCTATGTATGGCTTGGCAGTAGATACCAAGGGCTTCCTGCAAGGGGCTCCTGCTGGCAGCGAGAAGTCTG
CATCTCTTACCCAGCAGTATCCTGCCTCCGGAGAGAGCAAGACCAAGGATGAATCCCAGTCGCTGTTACG
GAGGCGAAGAGGATCTGGTGTTTTTTGTGCCAATTGCCTGACCACAAAGACCTCTCTCTGGCGAAAGAAT
GCAAATGGCGGATATGTATGCAATGCATGTGGTCTCTACCAGAAACTTCACTCGACTCCCAGGCCTTTAA
ACATCATTAAACAAAACAACGGCGAGCAGATTATTAGAAGACGGACAAGAAAGCGCCTTAACCCAGAGGC
ACTTCAGGCTGAGCAGCTCAACAAACAGCAGAGGGGAAGTGGGGAGGAGCAGGTCAATGGAAGCCCCTTA
GAGAGGAGGTCAGAAGATCACTTAAGTGAAAGTCATCCGAGAGAAATTCCACTTCCGAGCCTGAGTAAAT
ACGAAGCCCAGGGTTCATTGACTAAAAGCCATTCTGCTCAGCAGCCAGTCCTGGTCAGCCAAGCTCTGGA
TATCCACAAAAGGATGCAGCCTTTGCACATTCAGATAAAAAGTCCTCAGGAAAGTACTGGAGATCCAGGA
AATAGTTCATCCGTATCTGATGGGAAAGGAAGTTCTGAAAGAGGCAGCCCCATCGAAAAGTACATGAGAC
CTGCAAAACACCCCAACTATTCTCCACCAGGCAGCCCCATCGAAAAGTACCAATACCCGCTTTTTGGAGT
TCCTTTTGTACATAATGACTTCCAGAGTGAAGCTGATTGGCTACGGTTCTGGAGTAAATATAAGCTCTCC
GTTCCTGGGAATCCGCACTACTTGAGTCATGTGCCTGGCTTACCAAATCCTTGCCAAAACTATGTGCCTT
ATCCCACCTTCAATCTGCCTCCTCATTTCTCAGCTGTTGGATCAGACAATGACATTCCTCTAGATTTGGC
GATCAAGCATTCCAGACCTGGGCCAACTGCAAATGGTGCCTCCAAGGAGAAAACCAAGGCACCACCAACT
GTAAAAAATGAAGGTCCCTTGAATGTAGTTAAGACGGAGAAAGTTGACAGAAGCACTCAAGATGAACTTT
CAACGAAATGTGTGCACTGTGGCATTGTTTTTCTGGATGAAGTGATGTATGCTTTGCATATGAGTTGCCA
TGGTGACAGTGGACCTTTCCAGTGCAGCATATGCCAGCATCTTTGCACGGACAAATATGACTTCACAACA
CATATCCAGAGGGGCCTGCATAGGAACAATGCACAAGCAGAAAAAAATGGAAAACCTAAAGAGTAA

Translation (1281 aa):
MVRKKNPPLRNVASEGEGQTLEPTATESKVSGKNKELSADQMSENTDQSDVAELNSKEEHSTHGQEPSSS
GKKDLQISGLSEKAGFNYESPSKGGSLVSFPHDEVTDRNMLAFSSPAAGGVCEPLKSPQRAEADDPQDMA
CTPSGDSLETKEEHKMSPKATEETGPVQSGQANCQGLSPVSVASKNPQVPSDGGVRLSKPKGDLLVNDNP
DPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHSKDFQ
KVNRSVLSGVLQDISSSRPALLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTEL
EQHFLQTHPNKIKVSLPSSEGVKPSEKNSNKSIPALRASDSGDVGKWQDKMTVKAGDDTPVGYSVPIKPL
DSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYGKQHGAVQSGGLNPELNDKLPRGSVINQNDLAKSV
EGEPLTKPEKGLSGAKKKDFPSKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCT
IKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGVAGSSRVKHQCHQCSFSTPDVDVLL
FHYETVHESQASDVKQEANHLLGSDGQQAVRDSKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFT
AADTQSLLEHFNTVHCQEQEITTANGEEGGHAIPTIKEEPKIDLKVYSLLNPDSKMGETVPESIVKREKL
DDKEGLKDKIWTESSTDDLRGVAWRGADILRGSPSYTQASLGVLTPVSSSQEQTKTLRDSPNVEAAHLAR
PMYGLAVDTKGFLQGAPAGSEKSASLTQQYPASGESKTKDESQSLLRRRRGSGVFCANCLTTKTSLWRKN
ANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGSGEEQVNGSPL
ERRSEDHLSESHPREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQALDIHKRMQPLHIQIKSPQESTGDPG
NSSSVSDGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGVPFVHNDFQSEADWLRFWSKYKLS
VPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTANGASKEKTKAPPT
VKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMSCHGDSGPFQCSICQHLCTDKYDFTT
HIQRGLHRNNAQAEKNGKPKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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