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Report for CCDS27444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27444.1 Public Mus musculus 15 Dcstamp 23 108 98 CCDS HistoryNCBI Gene:75766Re-query CCDS DB by CCDS ID:27444.1Re-query CCDS DB by GeneID:75766See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022913.5 ENSMUSP00000022913.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022913.5Link to Ensembl Protein Viewer:ENSMUSP00000022913.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022913Re-query CCDS DB by Protein ID:ENSMUSP00000022913
Original member Current member NCBI NM_029422.4 NP_083698.1 Accepted alive Link to Nucleotide Sequence:NM_029422.4Link to Protein Sequence:NP_083698.1Re-query CCDS DB by Nucleotide ID:NM_029422Re-query CCDS DB by Protein ID:NP_083698Link to BLAST:NP_083698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083698.1 470 Q7TNJ0-1 470 100% 0 0

Chromosomal Locations for CCDS 27444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39754197 39755225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39759314 39759622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39760329 39760403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGAGGCTCTGGACCTTGGGCACCAGTATTTTCCTGAGGCTTTGGGGGACTTATGTGTTTCCACGAAGCC
CTAGCTGGCTGGACTTCATCCAGCATTTGGGAGTCTGTTGCTTTGTGGCCTTCCTTTCGGTGAGCCTCTT
CTCTGCAGCCTTTTACTGGATCCTGCCACCCGTTGCCCTGCTCTCTTCTGTCTGGATGATCACCTGTGTT
TTCCTATGCTGTTCCAAGCGCGCACGATGCTTCATTCTTCTGGCCGTTCTGTCGTGTGGCCTCCGTGAAG
GTAGGAACGCTTTGATTGCGGCTGGCACTGGGGTAGTGATCTTTGGACATGTGGAAAATATTTTTTATAA
CTTCAGAGGTCTCCTAGACAGCATGACTTGCAACCTAAGGGCAAAGAGCTTTTCAGTACATTTCCCACTT
TTAAAACGGTATACTGAAGCCATCCAGTGGATTTACGGCCTTGCCACTCCGCTGAATCTATTTGATGACC
TTGTTTCTTGGAACCAGACTCTGGTGGTCTCTCTTTTTAGTCCCAGCCATGCCCTGGAGGCTCATATGAA
TGACACTAGAGGAGAAGTCCTGGGAGTCCTGCACCATATGGTGGTCACGACAGAGCTGTTGACTTCCGTG
GGCCAGAAGTTGCTTGCCCTTGCCGGGCTTCTGCTCATCCTAGTCAGCACTGGCCTCTTCCTGAAGCGAT
TCCTGGGCCCTTGTGGCTGGAAGTATGAGAATGTCTACATCACCAAACAATTTGTTCGGTTTGATGAAAA
GGAGAGGCACCAACAGCGGCCCTGTGTCCTCCCGCTGAATAAGAAGGAAAGGAAGAAATATGTCATCGTC
CCATCTTTGCAGCTGACTCCTAAGGAGAAGAAAACCCTTGGGCTGTTCTTCCTTCCTGTCCTGACCTATC
TCTACATGTGGGTGCTGTTTGCCGCTGTGGACTATCTGCTGTATCGGCTCATCTCCTCCATGAACAAACA
GTTCCAAAGCTTGCCAGGGCTGGAAGTTCACTTGAAACTACGTGGAGAGAAGCAAGGAACCCAAGGAGTC
GTCCATGATTCTGCCTTTAATATATCTATGTTTGAACCGAGCTGCATTCCTAAACCACGTCTCAGTGTGT
CTGAGACTTGGGTTCCTCTCAGTATTATTCTGTTAACACTAATAATACTAGGATTGTTGTCTTCTATGCT
GATGCAGCTTAAAATTCTCGTGTCAGTCTCCTTCTACCCCAAAGTGGAGAGGGAGAGAATTGAATACCTG
CATGCGAAGCTCCTTGAGAAACGATCAAAGCAGCCATTGAGAGAGGCTGACGGGAAACCGAGCCTGTACT
TTAAAAAGATTCATTTCTGGTTTCCAGTCCTGAAAATGATTAGGAAGAAGCAGACAATCCCTGCAAATGA
AGATGATCTATGA

Translation (470 aa):
MRLWTLGTSIFLRLWGTYVFPRSPSWLDFIQHLGVCCFVAFLSVSLFSAAFYWILPPVALLSSVWMITCV
FLCCSKRARCFILLAVLSCGLREGRNALIAAGTGVVIFGHVENIFYNFRGLLDSMTCNLRAKSFSVHFPL
LKRYTEAIQWIYGLATPLNLFDDLVSWNQTLVVSLFSPSHALEAHMNDTRGEVLGVLHHMVVTTELLTSV
GQKLLALAGLLLILVSTGLFLKRFLGPCGWKYENVYITKQFVRFDEKERHQQRPCVLPLNKKERKKYVIV
PSLQLTPKEKKTLGLFFLPVLTYLYMWVLFAAVDYLLYRLISSMNKQFQSLPGLEVHLKLRGEKQGTQGV
VHDSAFNISMFEPSCIPKPRLSVSETWVPLSIILLTLIILGLLSSMLMQLKILVSVSFYPKVERERIEYL
HAKLLEKRSKQPLREADGKPSLYFKKIHFWFPVLKMIRKKQTIPANEDDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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