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Report for CCDS27432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27432.1 Public Mus musculus 15 Ywhaz 23 108 98 CCDS HistoryNCBI Gene:22631Re-query CCDS DB by CCDS ID:27432.1Re-query CCDS DB by GeneID:22631See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27432.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022894.13 ENSMUSP00000022894.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022894.13Link to Ensembl Protein Viewer:ENSMUSP00000022894.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022894Re-query CCDS DB by Protein ID:ENSMUSP00000022894
Original member Current member EBI ENSMUST00000110361.7 ENSMUSP00000105990.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110361.7Link to Ensembl Protein Viewer:ENSMUSP00000105990.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110361Re-query CCDS DB by Protein ID:ENSMUSP00000105990
Original member Current member EBI ENSMUST00000110362.3 ENSMUSP00000105991.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110362.3Link to Ensembl Protein Viewer:ENSMUSP00000105991.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110362Re-query CCDS DB by Protein ID:ENSMUSP00000105991
Original member Current member NCBI NM_001253805.1 NP_001240734.1 Accepted alive Link to Nucleotide Sequence:NM_001253805.1Link to Protein Sequence:NP_001240734.1Re-query CCDS DB by Nucleotide ID:NM_001253805Re-query CCDS DB by Protein ID:NP_001240734Link to BLAST:NP_001240734.1
Original member Current member NCBI NM_001253806.1 NP_001240735.1 Accepted alive Link to Nucleotide Sequence:NM_001253806.1Link to Protein Sequence:NP_001240735.1Re-query CCDS DB by Nucleotide ID:NM_001253806Re-query CCDS DB by Protein ID:NP_001240735Link to BLAST:NP_001240735.1
Original member Current member NCBI NM_001356569.1 NP_001343498.1 Accepted alive Link to Nucleotide Sequence:NM_001356569.1Link to Protein Sequence:NP_001343498.1Re-query CCDS DB by Nucleotide ID:NM_001356569Re-query CCDS DB by Protein ID:NP_001343498Link to BLAST:NP_001343498.1
Original member Current member NCBI NM_011740.3 NP_035870.1 Accepted alive Link to Nucleotide Sequence:NM_011740.3Link to Protein Sequence:NP_035870.1Re-query CCDS DB by Nucleotide ID:NM_011740Re-query CCDS DB by Protein ID:NP_035870Link to BLAST:NP_035870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240734.1 245 P63101 245 100% 0 0
NP_001240735.1 245 P63101 245 100% 0 0
NP_001343498.1 245 P63101 245 100% 0 0
NP_035870.1 245 P63101 245 100% 0 0

Chromosomal Locations for CCDS 27432.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 36772718 36772777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36775239 36775334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36775416 36775579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36776246 36776369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36790684 36790977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGATAAAAATGAGCTGGTGCAGAAGGCCAAGCTGGCCGAGCAGGCAGAGCGATATGATGACATGGCAG
CCTGCATGAAGTCTGTCACTGAGCAGGGAGCTGAGCTGTCGAATGAGGAGAGAAACCTTCTCTCTGTTGC
TTATAAAAACGTTGTAGGAGCCCGTAGGTCATCGTGGAGGGTCGTCTCAAGTATTGAGCAGAAGACGGAA
GGTGCTGAGAAAAAGCAGCAGATGGCTCGAGAATACAGAGAGAAGATCGAGACGGAGCTGCGTGACATCT
GCAACGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCCCAATGCTTCGCAACCAGAAAGCAAAGTCTT
CTATTTGAAAATGAAGGGTGACTACTACCGTTACTTGGCCGAGGTTGCTGCTGGTGATGACAAGAAAGGA
ATTGTGGACCAGTCACAGCAAGCATACCAAGAAGCATTTGAAATCAGCAAAAAGGAGATGCAGCCGACAC
ACCCCATCAGACTGGGTCTGGCCCTCAACTTCTCTGTGTTCTATTACGAGATCCTGAACTCCCCAGAGAA
AGCCTGCTCTCTTGCAAAAACAGCTTTCGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCG
TACAAAGACAGCACGCTAATAATGCAGTTACTGAGAGACAACTTAACATTGTGGACATCGGATACCCAAG
GAGATGAAGCAGAAGCAGGAGAAGGAGGGGAAAATTAA

Translation (245 aa):
MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE
GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQPESKVFYLKMKGDYYRYLAEVAAGDDKKG
IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES
YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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