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Report for CCDS27430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27430.1 Public Mus musculus 15 Snx31 23 108 98 CCDS HistoryNCBI Gene:66696Re-query CCDS DB by CCDS ID:27430.1Re-query CCDS DB by GeneID:66696See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013755.11 ENSMUSP00000013755.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013755.11Link to Ensembl Protein Viewer:ENSMUSP00000013755.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000013755Re-query CCDS DB by Protein ID:ENSMUSP00000013755
Original member Current member NCBI NM_025712.5 NP_079988.3 Accepted alive Link to Nucleotide Sequence:NM_025712.5Link to Protein Sequence:NP_079988.3Re-query CCDS DB by Nucleotide ID:NM_025712Re-query CCDS DB by Protein ID:NP_079988Link to BLAST:NP_079988.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079988.3 438 Q6P8Y7-2 438 100% 0 0

Chromosomal Locations for CCDS 27430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 36505381 36505470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36507699 36507755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36517599 36517676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36523443 36523556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36525574 36525777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36527685 36527777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36530774 36530843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36534415 36534502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36537508 36537598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36539297 36539407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36545550 36545614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36546781 36546895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36555260 36555334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36555448 36555513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAAGATGCACTTCTGCATCCCGGTGTCCCAGCAGCGGCCAGACGCGCTGGGGGGCCGCTACGTGTTGT
ACTCCGTGTACCTGGACGGGTTCCTCTTCTGCAAAGTACGCTACAGCCAGCTGCACCGCTGGGATGAACA
GCTGAGACGGGTGTTTGGAAACTGCCTGCCCCCTTTCCCACCCAAGTACTACCTGGCAATGACTACTGCT
ATGGCTGAAGAGAGGAGGGACCAGTTGGAACGCTACCTGCAAAATGTAACTGCGGATCCCCGTGTGACAA
GGAGTGATGTCTTCACTGAGTTTTTAACACTGGTGCAGCTGCACACATTGAATATCACCATCCAGAATGT
CGAGCTGGCTGTATTCCTGCCTGATGGAAGGAGCATTAAAGTAGAAGGTCTAACATCAGATACGGCTGAA
AGGGTCCTGGAGGTGATGGCCCACAAACTCGGATTGCAGCCAGATCTGGTGGGCTACTTCGGCCTTTTCC
TTATCCAGTGTTTCCCGGAGGGCAAGCTCTCTGTGGTGAAGAAGCTGGCCGACTTTGAGCTGCCTTACAC
TAGTCTTCAGAGTTCTGAAATGGAAAACTGTAAGATCGGGCTCAGAAAGTGGTACCTGGACCCAGCTCTG
GACTCCATGTTGATGGACTGCAGAGCAGCTGGAGACTTGCTGTACATGCAGGCAGTGCAGGACATTGAAA
AAGAATGGATGAAACCCACACAGGCTCAGAGGGAGGAACTAAAGGCACTGCAGAAGAAAGAGAATCAAAC
AAAGTTTTTGGAGCTGTCGCAGGAGGTCCGGCACTATGGGTATGTTCAGCTGGATCCCTGCACCTGCAAC
CACCCGGAACCTGGCTGTGGGGCCCAGCTTTCCATCGGCAATAATGAGATCAGCTGCTGTATAACTTTGC
CTAATGGCCAGATCCAGGACATTGCTTTCCAGATGAGCAGAGTGAAGTGCTGGCAGGTCACTTTCCTTGG
AACTCTGCTGGATACCGATGGGCCCCAGCGAACTCTCAACCAGAACCTAGAGCTGAGATTTCAGTATAGT
GAAGATAGTTGCCAGCAGTGGTTTGTTATTTACACCAAACAGGCTTTTTTCCTGAGCAGCTGCCTGAAGA
AGATGATCTCAGAGAGGATGACAAAGCTCACTGAGCAGAGCCCAGAGATGCAGATCGAGGTTCCAGAACA
AGGCAGAAGTAAAAAGCACCCGAGCCAACCTAGCCAGAAAGTCTATTTTAATTTTCTGAGAAAAGGCAAG
ATGAAGAGATCCGAAGGTGACTATGTTTGGGATACCCTGATGGAAGAAGGTCTCTGA

Translation (438 aa):
MKMHFCIPVSQQRPDALGGRYVLYSVYLDGFLFCKVRYSQLHRWDEQLRRVFGNCLPPFPPKYYLAMTTA
MAEERRDQLERYLQNVTADPRVTRSDVFTEFLTLVQLHTLNITIQNVELAVFLPDGRSIKVEGLTSDTAE
RVLEVMAHKLGLQPDLVGYFGLFLIQCFPEGKLSVVKKLADFELPYTSLQSSEMENCKIGLRKWYLDPAL
DSMLMDCRAAGDLLYMQAVQDIEKEWMKPTQAQREELKALQKKENQTKFLELSQEVRHYGYVQLDPCTCN
HPEPGCGAQLSIGNNEISCCITLPNGQIQDIAFQMSRVKCWQVTFLGTLLDTDGPQRTLNQNLELRFQYS
EDSCQQWFVIYTKQAFFLSSCLKKMISERMTKLTEQSPEMQIEVPEQGRSKKHPSQPSQKVYFNFLRKGK
MKRSEGDYVWDTLMEEGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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