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Report for CCDS27284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27284.1 Public Mus musculus 14 Nufip1 23 108 98 CCDS HistoryNCBI Gene:27275Re-query CCDS DB by CCDS ID:27284.1Re-query CCDS DB by GeneID:27275See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022586.1 ENSMUSP00000022586.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022586.1Link to Ensembl Protein Viewer:ENSMUSP00000022586.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000022586Re-query CCDS DB by Protein ID:ENSMUSP00000022586
Original member NCBI NM_013745.5 NP_038773.1 Updated not alive Link to Nucleotide Sequence:NM_013745.5Link to Protein Sequence:NP_038773.1Re-query CCDS DB by Nucleotide ID:NM_013745Re-query CCDS DB by Protein ID:NP_038773
Current member NCBI NM_013745.6 NP_038773.1 Accepted alive Link to Nucleotide Sequence:NM_013745.6Link to Protein Sequence:NP_038773.1Re-query CCDS DB by Nucleotide ID:NM_013745Re-query CCDS DB by Protein ID:NP_038773Link to BLAST:NP_038773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038773.1 484 Q9QXX8 484 100% 0 0

Chromosomal Locations for CCDS 27284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 76110933 76111326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76111924 76111997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76114175 76114273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76114978 76115040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76115784 76115860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76124486 76124578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76126138 76126331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76130813 76130929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76132972 76133198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76134786 76134902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCTGAACCGGCACCCGCCGTGTGGCCTTCGGCCCCGGATCTGACTCCCGCGCCCGGGACTCCGAGCG
AAGCTGCGCCGCCGCGGGACAACTGGGTGTACTGGGCCATGCTGCCGCCGCCACCACCTCCTCTGTCGTC
CCCAGTGGCGGGCTCGGAGCAGAGCCGGAAGGGACAGCCTCACGTGCTGCCCCAGCCTCCCTCCGGAGCG
CTTCCACCGTTCGATGCTCAGATTCTTCCCGCGGCGCAGCCTCCTTTCGATGCCCAGGCTCCGCCCGATG
CTCAATCTCAGTTCAGCGGCCAGCAGGCCTGGAATTTGCAAGCCTCCACGCCTTGGTACTGGGGATTGTC
TCCTAATGGTTTTTCCACGTACCACACGTCTTACCAATCTCCGGTTACACATTCTTATTTTCCACGATCA
CATGATGCAAAATTCAATTTGCCTCAAAACAGAAAACAGAAAACGAAGAAAAGAAAGGAACCGGTTTTCC
ATTTTTTCTGTGATACCTGTGATCGTGGCTTTAAAAATCAAGAAAAGTATGACACACACATGTCTGAACA
TACAAAATGCCCTGAAGTAGATTGCTCCTTTAGTGCACATGAGAAGATTGTCCAGTTCCATTGGAGAAAT
ATGCATGCTCCTGGTATGAAGAAGATCAAGCTAGACACTCCAGAGGAGATTGCAAGATGGAGGGAAGAGA
GACGAAAAAACTACCCAACTCTGGCCAATATTGAAAGGAAGAAAAAGTTACAACTGGAAAAGGCAAAGAG
AGGAGAAGTGTTGACAACCACACAGTATGGCAAAATGAAGGGCATGTCCAGACATTCACAGATGGCAAAG
ATCAGAAGTCCTGGTAAACATCATAAATGGAGAAGAGGTGGGGCTAGGCAGAGAGCAGTCGTTGGACTAG
GAAATCATGCCAGAGATTCGAAGCCTGAAGTTCCATCCAAGGCTAATGTGGACCCTCTAGGTGCTTTGAT
CCACAGCGACTCTGAGTCTGATAAGGAAGAGAAAGCGCAAAGGACTGTAGTGCCCAAGGAAGTGACACCA
GCCTTGTGTTCGCTGATGAGCAGCTACGGCGATGTCTCGGGGTCAGACAGTGAGCCAGAAGAAGCTCCCA
TCAAGACTGAAGCAGAAGTTCTGGCAGAAAACCATGTTCTTCATAGCAGTCCTCCCAAGAGTCCAAAACA
AAATGTTCAAACAACTGGTAGAACAGTCTCAAGATCCAAGTGGGAGAACCAGAGGAACGGACTCAGAAAG
ATAAGCCTTAAGCGGAAAAAGAGCCACTGTCACCCATTATTTGAACCAAGAACACATCACCCATATCTCC
TGGAAATGCTTCTAGCTCCAGATATTCGACATGAAAGAAATGTGATTTTGCAGTGTGTTCGATATATCAT
CAAAAAAGACTTTTTTGGACTTAATACTGATTCTGTGAAAACTGAAGAAGTGTAG

Translation (484 aa):
MAEPAPAVWPSAPDLTPAPGTPSEAAPPRDNWVYWAMLPPPPPPLSSPVAGSEQSRKGQPHVLPQPPSGA
LPPFDAQILPAAQPPFDAQAPPDAQSQFSGQQAWNLQASTPWYWGLSPNGFSTYHTSYQSPVTHSYFPRS
HDAKFNLPQNRKQKTKKRKEPVFHFFCDTCDRGFKNQEKYDTHMSEHTKCPEVDCSFSAHEKIVQFHWRN
MHAPGMKKIKLDTPEEIARWREERRKNYPTLANIERKKKLQLEKAKRGEVLTTTQYGKMKGMSRHSQMAK
IRSPGKHHKWRRGGARQRAVVGLGNHARDSKPEVPSKANVDPLGALIHSDSESDKEEKAQRTVVPKEVTP
ALCSLMSSYGDVSGSDSEPEEAPIKTEAEVLAENHVLHSSPPKSPKQNVQTTGRTVSRSKWENQRNGLRK
ISLKRKKSHCHPLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKKDFFGLNTDSVKTEEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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