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Report for CCDS27224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27224.1 Public Mus musculus 14 Dpysl2 23 108 98 CCDS HistoryNCBI Gene:12934Re-query CCDS DB by CCDS ID:27224.1Re-query CCDS DB by GeneID:12934See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022629.8 ENSMUSP00000022629.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022629.8Link to Ensembl Protein Viewer:ENSMUSP00000022629.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022629Re-query CCDS DB by Protein ID:ENSMUSP00000022629
Original member Current member NCBI NM_009955.3 NP_034085.2 Accepted alive Link to Nucleotide Sequence:NM_009955.3Link to Protein Sequence:NP_034085.2Re-query CCDS DB by Nucleotide ID:NM_009955Re-query CCDS DB by Protein ID:NP_034085Link to BLAST:NP_034085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034085.2 572 O08553 572 100% 0 0

Chromosomal Locations for CCDS 27224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66805345 66805436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66806915 66807080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66807862 66808041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66813126 66813296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66814955 66815096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66815431 66815587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66824345 66824465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66828771 66828839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66829362 66829442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66829921 66829982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66834212 66834376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66862473 66862657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66865082 66865170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66868330 66868368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGTCTTATCAGGGGAAGAAAAATATTCCACGCATCACGAGCGATCGTCTTCTGATCAAAGGTGGCAAGA
TTGTGAATGATGACCAGTCCTTCTATGCAGACATATACATGGAAGATGGGTTGATCAAGCAAATAGGAGA
AAACCTGATTGTACCAGGAGGGGTGAAGACCATCGAAGCCCACTCCAGAATGGTGATTCCCGGAGGGATT
GACGTGCATACTCGCTTCCAGATGCCTGACCAGGGAATGACATCCGCTGATGACTTCTTCCAGGGAACCA
AGGCGGCCCTGGCCGGGGGAACCACCATGATCATTGACCATGTTGTTCCTGAGCCCGGGACGAGCCTATT
GGCTGCCTTTGATCAGTGGAGGGAGTGGGCTGACAGCAAGTCCTGCTGTGACTATTCGCTGCACGTGGAC
ATCACTGAGTGGCACAAGGGCATCCAGGAGGAGATGGAAGCTCTGGTGAAGGACCACGGGGTAAACTCCT
TCCTCGTGTACATGGCTTTCAAAGATCGATTCCAGCTGACGGATTCCCAGATCTATGAAGTGCTGAGCGT
GATCCGGGATATCGGTGCCATAGCTCAAGTCCACGCAGAGAATGGTGACATCATTGCTGAGGAACAGCAG
AGGATCCTGGATCTGGGCATCACGGGCCCCGAGGGACACGTGTTGAGCCGGCCAGAGGAGGTCGAGGCTG
AAGCTGTGAACCGGTCCATCACTATTGCCAACCAGACCAACTGCCCTCTGTATGTCACCAAAGTGATGAG
CAAGAGTGCGGCTGAAGTCATCGCTCAGGCACGGAAGAAGGGAACTGTGGTGTATGGTGAGCCCATCACG
GCCAGCCTGGGGACTGATGGCTCTCATTACTGGAGCAAGAACTGGGCCAAGGCTGCGGCCTTTGTCACCT
CCCCACCCTTGAGCCCCGACCCAACCACTCCAGACTTTCTCAACTCGTTGCTGTCCTGTGGAGACCTCCA
AGTCACTGGCAGTGCCCACTGCACCTTCAACACTGCCCAGAAGGCTGTGGGGAAGGACAACTTCACCTTG
ATTCCCGAGGGCACCAACGGCACTGAGGAGCGGATGTCTGTCATTTGGGATAAAGCTGTGGTCACTGGGA
AGATGGATGAGAATCAGTTTGTGGCTGTGACCAGCACCAACGCAGCCAAAGTCTTCAACCTTTACCCCCG
GAAAGGTCGCATCTCGGTGGGATCTGATGCTGACTTGGTCATCTGGGACCCTGACAGTGTGAAGACCATC
TCTGCCAAGACACACAACAGTGCTCTTGAGTACAACATCTTTGAAGGCATGGAGTGTCGCGGCTCCCCAC
TGGTGGTCATCAGCCAGGGCAAGATTGTCCTGGAGGACGGCACACTTCATGTCACTGAAGGCTCAGGACG
CTACATTCCCCGGAAGCCCTTCCCTGACTTTGTGTACAAACGCATCAAAGCAAGGAGCAGGCTGGCTGAG
CTGAGAGGGGTCCCTCGTGGCCTGTATGACGGACCGGTATGCGAGGTGTCTGTGACGCCCAAGACGGTGA
CTCCAGCCTCATCAGCTAAGACATCCCCTGCCAAGCAGCAGGCACCACCTGTTCGGAACCTGCACCAGTC
TGGATTCAGCTTGTCTGGTGCTCAGATTGACGACAACATTCCCCGCCGCACCACCCAGCGCATCGTGGCA
CCCCCTGGTGGCCGTGCCAACATCACCAGCCTGGGCTAA

Translation (572 aa):
MSYQGKKNIPRITSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGI
DVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDYSLHVD
ITEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDSQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQ
RILDLGITGPEGHVLSRPEEVEAEAVNRSITIANQTNCPLYVTKVMSKSAAEVIAQARKKGTVVYGEPIT
ASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTL
IPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRISVGSDADLVIWDPDSVKTI
SAKTHNSALEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARSRLAE
LRGVPRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAPPVRNLHQSGFSLSGAQIDDNIPRRTTQRIVA
PPGGRANITSLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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