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Report for CCDS27166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27166.1 Public Mus musculus 14 1700129C05Rik 23 108 98 CCDS HistoryNCBI Gene:67932Re-query CCDS DB by CCDS ID:27166.1Re-query CCDS DB by GeneID:67932See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27166.1
This CCDS is supported by several transcripts, including the mRNAs AK006084.1, AK007313.1 and BC049552.1. It should be noted that this gene has no known function, and the protein has no predicted features and does not have good homology support. It is, however, supported by conservation in rat and by a paralogous mouse gene located ~15 kb away (represented by CCDS27167.1). It is therefore possible that this gene has a rodent-specific function.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27166.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022548.9 ENSMUSP00000022548.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022548.9Link to Ensembl Protein Viewer:ENSMUSP00000022548.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022548Re-query CCDS DB by Protein ID:ENSMUSP00000022548
Original member Current member NCBI NM_026461.2 NP_080737.1 Accepted alive Link to Nucleotide Sequence:NM_026461.2Link to Protein Sequence:NP_080737.1Re-query CCDS DB by Nucleotide ID:NM_026461Re-query CCDS DB by Protein ID:NP_080737Link to BLAST:NP_080737.1

Chromosomal Locations for CCDS 27166.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59133404 59133418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59139604 59139675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59140004 59140102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59142113 59142193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59142458 59142847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGATGAGAAGGAAGCGGCCAAGGATTTTGGGAAGTCTACGCAATCCTGTTCCCCCTAAGGATCTTTCTC
TGCCCTCTGATCAACCAAAAAACATTCATTTCTTCCCACCTCAGACTCCCATGCCTCAGCCTACCTTTCG
TACCAACCCTCTTTTCGTTTTCTACCCTACCTCCTTCCCTGCCCTGAGGAACACTTCCTACTTCCCCACC
TTAATGATTGCTATGCCCAGCTCCTCCTGTGTAAACAAACTTTCCTCTAAGCACCCCTCTTATTTCCAGA
CCCCTTCCTTCCTGTCTACCCTCATGTCTACCTCTTCTCCAAGAGCACTGCTGGATAGTTGCCTAGTTCC
TCTTTCCCATCTGGAAACTAGCTACTTTCAGCCAGAGGAGCAAATCCTTCAGGAACTGAACAAGATTTCT
CTAGACCCAGAGCTTAAAATTGGAGGAAGCAGATATGACCTCACATCCTTGGTACCAGGGAATCTGCAGC
CAGGGACAGAGACTGGAAATCATGAAGTGGAAGATGCTCAATCCCTGGATGATCTTGATGCCTTCACTCA
GGAAACACTGGACAGAATGAATTGTCATTGGTCAAGAACGCAAGTTTTACCAAATAACATTTCGGGATGG
AGAAACCAGAGGGGGAAACTGAAGTGA

Translation (218 aa):
MMRRKRPRILGSLRNPVPPKDLSLPSDQPKNIHFFPPQTPMPQPTFRTNPLFVFYPTSFPALRNTSYFPT
LMIAMPSSSCVNKLSSKHPSYFQTPSFLSTLMSTSSPRALLDSCLVPLSHLETSYFQPEEQILQELNKIS
LDPELKIGGSRYDLTSLVPGNLQPGTETGNHEVEDAQSLDDLDAFTQETLDRMNCHWSRTQVLPNNISGW
RNQRGKLK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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