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Report for CCDS27104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27104.1 Public Mus musculus 14 Pabpn1 23 108 98 CCDS HistoryNCBI Gene:54196Re-query CCDS DB by CCDS ID:27104.1Re-query CCDS DB by GeneID:54196See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022808.13 ENSMUSP00000022808.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022808.13Link to Ensembl Protein Viewer:ENSMUSP00000022808.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022808Re-query CCDS DB by Protein ID:ENSMUSP00000022808
Original member Current member NCBI NM_019402.2 NP_062275.1 Accepted alive Link to Nucleotide Sequence:NM_019402.2Link to Protein Sequence:NP_062275.1Re-query CCDS DB by Nucleotide ID:NM_019402Re-query CCDS DB by Protein ID:NP_062275Link to BLAST:NP_062275.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062275.1 302 Q8CCS6-1 302 100% 0 0

Chromosomal Locations for CCDS 27104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54894156 54894494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54894848 54894962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54895629 54895696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54895817 54895923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54896952 54897039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54897121 54897272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54898017 54898056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGC
GGCGCCATCTTGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGACCCGGGGGGCGCAGGGGACTACGG
GAACGGCCTGGAGTCTGAGGAGCTGGAGCCTGGGGAGCTGCTGCCGGAGCCCGAGCCCGAAGAGGAGCCG
CCCCGGCCCCGCGCCCCTCCGGGAGCTCCGGGTCCTGGGCCCGGCTCGGGAGCCCCCGGCAGTCAGGAGG
AGGAGGAAGAGCCGGGACTGGTTGAGGCCGACCCCGGCGACGGCGCCATTGAGGACCCGGAGCTAGAAGC
GATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAGGCTGAGAAGCTAAAGGAGCTACAAAACGAGGTAGAG
AAGCAGATGAATATGAGTCCACCCCCAGGCAATGCTGGCCCAGTGATCATGTCTCTTGAGGAGAAGATGG
AGGCTGATGCCCGCTCTATCTACGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGAGCTGGAAGCCCA
TTTTCATGGCTGTGGTTCAGTCAACCGTGTTACTATACTCTGTGACAAATTTAGTGGCCATCCCAAAGGG
TTTGCATATATAGAGTTCTCGGACAAAGAGTCAGTGAGGACGTCCCTGGCCTTAGATGAGTCCCTGTTCA
GAGGAAGACAAATCAAGGTGATTCCCAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTT
CCCGCGCTCCCGATACCGTGCCCGGACTACCAACTACAACAGCTCCCGATCTCGATTCTACAGTGGTTTT
AACAGCAGGCCCCGGGGTCGAATCTACAGGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA

Translation (302 aa):
MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGDPGGAGDYGNGLESEELEPGELLPEPEPEEEP
PRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEADPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVE
KQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG
FAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSRFYSGF
NSRPRGRIYRGRARATSWYSPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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