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Report for CCDS27050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27050.1 Public Mus musculus 14 Or5au1 23 108 98 CCDS HistoryNCBI Gene:258420Re-query CCDS DB by CCDS ID:27050.1Re-query CCDS DB by GeneID:258420See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052560.6 ENSMUSP00000063109.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052560.6Link to Ensembl Protein Viewer:ENSMUSP00000063109.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052560Re-query CCDS DB by Protein ID:ENSMUSP00000063109
Original member Current member EBI ENSMUST00000216188.1 ENSMUSP00000149854.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216188.1Link to Ensembl Protein Viewer:ENSMUSP00000149854.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216188Re-query CCDS DB by Protein ID:ENSMUSP00000149854
Original member Current member EBI ENSMUST00000214342.1 ENSMUSP00000150231.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214342.1Link to Ensembl Protein Viewer:ENSMUSP00000150231.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214342Re-query CCDS DB by Protein ID:ENSMUSP00000150231
Original member Current member EBI ENSMUST00000214071.1 ENSMUSP00000150675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214071.1Link to Ensembl Protein Viewer:ENSMUSP00000150675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214071Re-query CCDS DB by Protein ID:ENSMUSP00000150675
Original member Current member EBI ENSMUST00000216907.1 ENSMUSP00000151163.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216907.1Link to Ensembl Protein Viewer:ENSMUSP00000151163.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216907Re-query CCDS DB by Protein ID:ENSMUSP00000151163
Original member Current member NCBI NM_001001808.2 NP_001001808.2 Accepted alive Link to Nucleotide Sequence:NM_001001808.2Link to Protein Sequence:NP_001001808.2Re-query CCDS DB by Nucleotide ID:NM_001001808Re-query CCDS DB by Protein ID:NP_001001808Link to BLAST:NP_001001808.2

Chromosomal Locations for CCDS 27050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52035174 52036109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAAAGAACTAACCTGAGCCACGAGATGGAGTTTGAACTCTTGGGCCTCACCAGTGACCCCCAGCTCC
AGAAGCTGCTCTTTGTGGTGTTCCTGGTCATGTACGCCATCACTGTGCTGGGGAACCTGGTCATGTTCTT
TCTCATCCATGTGAGTACCACCCTGCACACGCCTATGTACTCTCTCCTCAAGAGCCTTTCGCTCCTGGAT
TTCTGCTACTCTTCTACGGTGGTTCCCCAAACACTGTTGAACTTCTTGGTTGAGAGAAAAGTAATCTCTT
ACTTTGGCTGCATGGCTCAGATGTTCTTTTTTGCGGGCTTCGCCACCAGCGAGTGCTATCTCATTGCTGC
AATGGCCTATGATCGCTATGTTGCTGTTTGCAGTCCTCTCCTCTATCCGACCATAGTGTCTCCCAATGTC
TGTGCCTCTCTGATTGGGGGCTCCTATGGAGCAGGGTTTCTCAATTCTCTTATCCATACAAGCTGCATCT
TCAGTCTGAACTTCTGTGGTGCTCACGTGGTCACTCATTTCTTCTGCGACGGACCGCCCATTCTGTCCCT
GTCCTGCGTGGACACTTCGCTGTGTGAGATCTTGCTCTTCATTTTTGCCGGCTTCAACCTTTTGAGCTGT
ACTCTCACCATCTTGATCTCCTACTTACTAATTTTCATCGCCATCCTACAAATGCGTTCAAACCAGGGCA
GGTTCAAGGCGTTCTCCACCTGCTCCTCCCACCTCACTGCTGTGTGCTTCTTTTTTGGCACAACACTTTT
TATGTACCTGCGCCCTAAGTCCAGCTACTCCTTGACCCAGGACCGCACAGTTGCCGTGATCTACACAGCG
GTGATCCCAATGCTGAACCCCTTAATCTACTCTTTGAGAAACAAGGATGTGAAGGAGGCTCTAAGGAGGG
TTTGGGGCTGGAAAGCAATGGGATGA

Translation (311 aa):
MERTNLSHEMEFELLGLTSDPQLQKLLFVVFLVMYAITVLGNLVMFFLIHVSTTLHTPMYSLLKSLSLLD
FCYSSTVVPQTLLNFLVERKVISYFGCMAQMFFFAGFATSECYLIAAMAYDRYVAVCSPLLYPTIVSPNV
CASLIGGSYGAGFLNSLIHTSCIFSLNFCGAHVVTHFFCDGPPILSLSCVDTSLCEILLFIFAGFNLLSC
TLTILISYLLIFIAILQMRSNQGRFKAFSTCSSHLTAVCFFFGTTLFMYLRPKSSYSLTQDRTVAVIYTA
VIPMLNPLIYSLRNKDVKEALRRVWGWKAMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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