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Report for CCDS2702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2702.1 Public Homo sapiens 3 NKTR 24 110 108 CCDS HistoryNCBI Gene:4820Re-query CCDS DB by CCDS ID:2702.1Re-query CCDS DB by GeneID:4820See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232978.13 ENSP00000232978.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232978.13Link to Ensembl Protein Viewer:ENSP00000232978.8Re-query CCDS DB by Nucleotide ID:ENST00000232978Re-query CCDS DB by Protein ID:ENSP00000232978
Original member Current member NCBI NM_005385.4 NP_005376.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005385.4Link to Protein Sequence:NP_005376.2Re-query CCDS DB by Nucleotide ID:NM_005385Re-query CCDS DB by Protein ID:NP_005376Link to BLAST:NP_005376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005376.2 1462 P30414 1462 100% 0 0

Chromosomal Locations for CCDS 2702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42601007 42601064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42617570 42617644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42619020 42619127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42619664 42619708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42621429 42621516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42630546 42630575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42631171 42631316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42632601 42632823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42633580 42633735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42634613 42634700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42635221 42635366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42636868 42639750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42642501 42642596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42643339 42643395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42643902 42644003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42645888 42645975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4389 nt):
ATGGGGGCGCAGGACCGGCCGCAGTGCCACTTCGACATCGAGATCAACCGGGAGCCGGTTGGTCGCATTA
TGTTTCAGCTCTTCTCAGACATATGTCCAAAAACATGCAAAAACTTCCTTTGCTTGTGCTCAGGAGAGAA
AGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACGTTCCATCGTGTGGTTAAAAAC
TTTATGATTCAGGGTGGGGACTTCAGTGAAGGTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATATT
TTAAAGATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTATCAATGGCAAATCGAGGGAAACA
TACCAATGGTTCCCAGTTTTTCATTACCACAAAGCCTGCTCCACACCTGGATGGGGTGCATGTAGTCTTT
GGACTGGTTATTTCTGGTTTTGAAGTAATCGAACAAATTGAAAATCTGAAGACCGATGCTGCAAGCAGAC
CATATGCAGATGTGCGAGTTATTGACTGTGGAGTACTTGCCACAAAATCAATAAAAGATGTTTTTGAGAA
AAAAAGGAAGAAACCAACTCATTCAGAAGGCTCGGATTCCTCTTCCAATTCCTCCTCTTCTTCAGAATCA
TCTTCAGAAAGTGAACTTGAACATGAGAGAAGCAGAAGGAGGAAACATAAGAGGAGGCCAAAAGTTAAAC
GTTCTAAAAAGAGGCGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGGAATAAACATGCAATGAACCCAAA
AGGTCACTCTGAGAGGAGTGATACCAATGAAAAAAGGTCAGTTGATTCCAGTGCTAAAAGGGAAAAACCT
GTGGTCCGCCCAGAAGAGATTCCTCCAGTGCCTGAGAACCGATTTTTACTGAGAAGAGATATGCCTGTTG
TTACTGCAGAACCTGAACCGAAGATTCCTGATGTTGCACCCATTGTAAGTGATCAGAAACCATCTGTATC
AAAGTCTGGACGGAAGATTAAAGGAAGGGGCACAATTCGCTATCACACACCTCCAAGATCAAGATCCTGT
TCTGAGTCAGATGATGATGACAGCAGTGAAACTCCTCCTCACTGGAAAGAGGAAATGCAGAGATTAAGAG
CATATAGACCACCTAGTGGAGAAAAATGGAGTAAAGGAGATAAGTTAAGTGACCCCTGTTCAAGCCGATG
GGATGAAAGAAGCTTGTCTCAGAGATCCAGATCATGGTCCTATAATGGATATTATTCAGACCTTAGTACA
GCAAGACACTCTGGCCACCATAAAAAACGCAGAAAAGAAAAAAAGGTTAAGCATAAAAAGAAAGGGAAAA
AGCAGAAACACTGCAGAAGACACAAACAAACAAAGAAGAGAAGGATTCTTATACCGTCTGACATAGAATC
CTCAAAATCTTCCACTCGAAGAATGAAATCCTCTTGTGATAGAGAAAGGAGTTCTCGTTCTTCCTCATTG
TCATCTCATCACTCATCAAAGAGAGACTGGTCTAAATCTGATAAGGATGTCCAGAGCTCTTTAACCCATT
CCAGCAGAGACTCATACAGATCAAAATCTCACTCACAGTCTTATTCTAGAGGAAGCTCAAGATCAAGGAC
TGCGTCAAAGTCCTCATCACATTCTCGAAGTAGATCAAAGTCCAGATCTAGTTCCAAGTCTGGGCACCGA
AAGAGAGCATCAAAATCACCAAGAAAAACAGCTTCTCAGTTAAGTGAAAATAAACCAGTTAAAACAGAAC
CTTTAAGAGCAACCATGGCACAAAATGAAAATGTAGTAGTACAACCAGTTGTAGCAGAAAATATTCCTGT
AATACCACTGAGTGACAGTCCCCCCCCTTCAAGATGGAAGCCTGGACAGAAACCTTGGAAGCCCTCTTAT
GAGCGAATTCAGGAAATGAAAGCTAAAACAACCCATTTGCTACCCATCCAAAGCACTTACAGTTTAGCAA
ATATTAAAGAGACTGGTAGCTCATCATCCTACCATAAAAGAGAAAAAAATTCGGAAAGTGATCAGAGCAC
TTATTCAAAATACAGTGATAGAAGTTCAGAAAGCTCACCAAGGTCAAGGAGCAGATCTTCTAGGAGTAGA
TCTTATTCCAGATCATATACAAGATCACGTAGTCTAGCTAGTTCACATTCAAGGTCTAGGTCTCCATCAT
CTAGATCTCATTCACGAAATAAATACAGTGATCATTCACAGTGTAGTAGATCATCTTCATATACTTCTAT
TAGCAGTGATGATGGAAGGCGAGCTAAGAGGAGACTTAGATCCAGTGGGAAAAAAAATAGCGTTTCACAT
AAAAAGCATAGCAGCAGCTCTGAAAAGACACTTCACAGTAAATATGTCAAAGGTAGAGACAGGTCTTCAT
GTGTGAGAAAGTATAGCGAGAGCAGATCATCTTTAGATTATTCTTCAGACAGTGAGCAGTCAAGTGTTCA
GGCCACACAGTCAGCCCAGGAAAAAGAGAAGCAGGGCCAAATGGAAAGAACACATAATAAACAAGAAAAA
AACAGAGGTGAAGAAAAATCCAAGTCTGAACGGGAATGCCCTCATTCAAAAAAAAGAACTTTGAAAGAGA
ATCTTTCTGATCACCTTAGAAATGGCAGTAAGCCCAAAAGGAAGAATTATGCTGGTAGTAAATGGGACTC
TGAGTCAAATTCAGAACGAGATGTCACTAAAAACAGTAAAAATGACTCCCATCCATCCTCTGACAAGGAA
GAAGGTGAGGCCACATCCGATTCTGAATCAGAGGTTAGTGAAATTCACATCAAAGTCAAACCCACAACCA
AGTCGTCCACAAATACTTCACTGCCTGATGATAATGGTGCTTGGAAATCAAGCAAACAGCGCACATCAAC
TTCTGACTCTGAGGGGTCCTGTTCCAATTCGGAAAACAATAGGGGAAAGCCACAAAAGCACAAACATGGG
TCAAAGGAAAATCTTAAAAGAGAACACACCAAAAAAGTGAAAGAGAAATTGAAAGGGAAAAAAGACAAAA
AGCATAAGGCTCCAAAACGAAAGCAAGCATTTCACTGGCAGCCTCCACTAGAATTTGGTGAAGAGGAGGA
GGAGGAGATTGATGACAAGCAAGTTACTCAGGAATCAAAAGAGAAAAAAGTTTCTGAAAACAATGAAACC
ATAAAAGATAATATTCTAAAAACTGAGAAATCCAGTGAAGAGGACCTTTCAGGTAAACATGATACAGTGA
CTGTTTCATCAGATCTTGATCAGTTTACTAAAGATGATAGTAAACTCAGTATTTCTCCCACAGCTTTAAA
TACTGAGGAAAATGTGGCCTGTTTACAAAACATTCAGCACGTTGAAGAAAGTGTTCCCAATGGAGTGGAA
GATGTGCTTCAAACAGATGACAACATGGAGATCTGCACTCCTGATAGGAGTTCCCCAGCAAAAGTAGAGG
AGACTTCCCCTCTAGGAAATGCACGGCTTGATACCCCAGATATAAACATTGTTTTGAAGCAGGATATGGC
AACGGAACATCCTCAAGCAGAGGTAGTAAAACAGGAAAGCAGCATGTCCGAAAGTAAAGTGTTGGGTGAA
GTGGGGAAACAGGACAGCAGCTCTGCTAGCTTGGCTAGTGCTGGAGAAAGTACCGGGAAGAAGGAGGTGG
CTGAGAAGAGCCAGATCAACCTCATTGATAAGAAATGGAAGCCCCTGCAAGGTGTGGGGAACCTGGCAGC
ACCTAATGCTGCCACATCCAGTGCTGTGGAAGTTAAGGTGTTGACCACTGTGCCTGAAATGAAACCACAA
GGCTTGAGAATAGAAATTAAAAGCAAAAATAAAGTTCGGCCTGGGTCTCTCTTTGATGAAGTAAGAAAGA
CAGCACGCTTAAACCGTAGACCAAGAAATCAGGAGAGTTCAAGTGATGAGCAGACGCCTAGTCGGGATGA
TGATAGCCAGTCCAGGAGTCCAAGTAGATCTCGAAGTAAATCTGAAACCAAATCAAGACACAGAACAAGG
TCTGTCTCCTATAGTCACTCAAGAAGTCGATCGAGAAGTTCCACATCATCTTATCGATCAAGAAGCTACT
CTAGAAGTCGGAGCAGAGGATGGTACAGCAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAGTTA
CAAAAGTCACAGGACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAGG
TCCTACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACC
ACCGAGGCAGAAGTTATAATCGGCGGTCCAGGAGTTGTAGATCTTATGGCTCTGACAGTGAAAGTGACCG
AAGTTACTCTCATCACCGGAGCCCCAGTGAGAGCAGCAGATACAGTTGA

Translation (1462 aa):
MGAQDRPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN
FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVF
GLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKSIKDVFEKKRKKPTHSEGSDSSSNSSSSSES
SSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNKHAMNPKGHSERSDTNEKRSVDSSAKREKP
VVRPEEIPPVPENRFLLRRDMPVVTAEPEPKIPDVAPIVSDQKPSVSKSGRKIKGRGTIRYHTPPRSRSC
SESDDDDSSETPPHWKEEMQRLRAYRPPSGEKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLST
ARHSGHHKKRRKEKKVKHKKKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSRSSSL
SSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHR
KRASKSPRKTASQLSENKPVKTEPLRATMAQNENVVVQPVVAENIPVIPLSDSPPPSRWKPGQKPWKPSY
ERIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRSSRSR
SYSRSYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSH
KKHSSSSEKTLHSKYVKGRDRSSCVRKYSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEK
NRGEEKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSHPSSDKE
EGEATSDSESEVSEIHIKVKPTTKSSTNTSLPDDNGAWKSSKQRTSTSDSEGSCSNSENNRGKPQKHKHG
SKENLKREHTKKVKEKLKGKKDKKHKAPKRKQAFHWQPPLEFGEEEEEEIDDKQVTQESKEKKVSENNET
IKDNILKTEKSSEEDLSGKHDTVTVSSDLDQFTKDDSKLSISPTALNTEENVACLQNIQHVEESVPNGVE
DVLQTDDNMEICTPDRSSPAKVEETSPLGNARLDTPDINIVLKQDMATEHPQAEVVKQESSMSESKVLGE
VGKQDSSSASLASAGESTGKKEVAEKSQINLIDKKWKPLQGVGNLAAPNAATSSAVEVKVLTTVPEMKPQ
GLRIEIKSKNKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTR
SVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSR
SYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSCRSYGSDSESDRSYSHHRSPSESSRYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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