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Report for CCDS26983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26983.1 Public Mus musculus 14 Samd4 23 108 98 CCDS HistoryNCBI Gene:74480Re-query CCDS DB by CCDS ID:26983.1Re-query CCDS DB by GeneID:74480See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100672.10 ENSMUSP00000098237.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100672.10Link to Ensembl Protein Viewer:ENSMUSP00000098237.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100672Re-query CCDS DB by Protein ID:ENSMUSP00000098237
Original member Current member EBI ENSMUST00000137543.8 ENSMUSP00000114621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137543.8Link to Ensembl Protein Viewer:ENSMUSP00000114621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137543Re-query CCDS DB by Protein ID:ENSMUSP00000114621
Original member Current member NCBI NM_028966.3 NP_083242.1 Accepted alive Link to Nucleotide Sequence:NM_028966.3Link to Protein Sequence:NP_083242.1Re-query CCDS DB by Nucleotide ID:NM_028966Re-query CCDS DB by Protein ID:NP_083242Link to BLAST:NP_083242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083242.1 623 Q8CBY1-3 623 100% 0 0

Chromosomal Locations for CCDS 26983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 46884821 46885016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47016277 47016795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47064220 47064329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47066388 47066474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47073836 47074148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47077507 47077592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47083497 47083615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47087759 47087960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47089044 47089170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47096091 47096174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47101431 47101459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGATGTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAACGAGTGCGAGCAGACTG
TTGCACTGCTGTCGCTGCTCAAGCGCGTAAGCCAGACCCAGGCCCGCTTCCTTCAGCTCTGCCTGGAGCA
CTCGCTGGCCGACTGCGCCGAGCTGCACGTCCTGGAAGGAGAGGCCAACAGCCCGGGAATCATTAACCAA
TGGCAACAGGAATCCAAGGATAAAGTGATTTCCCTTCTGCTAACTCACCTGCCTTTGCTGAAGCCAGGAA
ACCTCGACGCGAAAGCAGAGTATATGAAACTGCTGCCCAAGATCCTGGCACACTCTATCGAACACAACCA
GCACATTGAGGAGAGCAGGCAGCTGCTGTCCTATGCTTTGATCCACCCAGCCACTTCCTTGGAAGACCGC
AGCGCACTAGCCATGTGGCTGAATCACTTGGAGGACCGCACATCCACCAGCTTTGGTAGCCAGAACCGAG
GCCGCTCGGACTCTGTGGATTATGGACAGACGCATTACTATCACCAAAGACAGAACTCTGACGATAAGCT
CAATGGCTGGCAGAACTCTCGGGATTCTGGGATTTGCATCAGTGCCTCCAACTGGCAGGACAAGAGCCTG
GGCTGTGAGAATGGCCATGTGCCCCTCTACTCTTCCTCGTCTGTCCCTGCCACAATCAACACGATTGGAA
CCGGCGCAAGCACGAATGTTCCAGCTTGGTTAAAAAGCCTCCGCCTGCACAAGTACGCTGCGCTCTTCTC
GCAGATGACTTATGAGGAAATGATGGCCCTCACTGAGTGTCAACTGGAGGCTCAGAATGTTACCAAAGGC
GCAAGACACAAAATTGTAATCAGTATTCAGAAGCTCAAAGAAAGACAGAACCTCCTGAAGTCTTTGGAAA
GGGACATCATCGAAGGGGGCAGCCTGCGCACCCCCCTCCAGGAGCTACATCAGATGATCCTGACACCCAT
CAAGGCCTACAGCTCTCCCAGTACCACCCCTGAGGTGCGCTGCCGGGAGCCCTCACTGATGGAGAGCCCA
AGCCCTGACTGCAAAGACAGCGCTGCAGCAGTCACCAGCGCCACAGCCAGTGCCTCAGCCGGTGCCAGCG
GTGGACTGCAACCACCCCAGCTGAGCAGCTGCGACGGAGAGCTGGCTGTCGCCCCTCTGCCGGAGGGGGA
CCTCCCGGGGCAGTTCACCCGAGTCATGGGGAAAGTGTGCACACAGCTCTTGGTCTCCAGACCCGATGAA
GAAAATATAAGCTCCTATCTACAGCTCTTAGACAAGTGTCTTGTTCATGAGGCATTTACAGAGACACAGA
AAAAAAGATTGTTGTCATGGAAACAGCAGGTGCAGAAGCTCTTTCGGTCTTTCCCTCGGAAAACCCTTCT
AGACATATCAGGATATCGACAGCAAAGAAATCGTGGCTTTGGGCAGTCCAACTCCCTCCCAACAGCCAGC
TCTGTGGGCAGCGGCATGGGCAGACGGAACCCACGACAGTACCAGATCGCATCTCGGAATGTCCCTTCCG
CCCGCCTTGGTCTCCTGGGCACCAGTGGATTTGTCAGCTCCAACCAGCGCCACACCGCTGCCAACCCCAC
CATCATGAAACAAGGAAGACAGAACCTCTGGTTTGCCAACCCTGGGGGCAGCAACAGCATGCCCAGCCGC
ACCCACAGCTCCGTCCAGAAGACCCGCTCGCTGCCCGTGCATACTTCCCCACAAAACATGCTGATGTTCC
AGCAACCAGAATTTCAGCTTCCTGTGACTGAACCTGACATCAACAATAGGCTGGAGTCCTTGTGCCTCAG
TATGACGGAGCATGCCCTGGGAGACGGGGTTGACCGGACCTCCACAATCTAG

Translation (623 aa):
MMFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEGEANSPGIINQ
WQQESKDKVISLLLTHLPLLKPGNLDAKAEYMKLLPKILAHSIEHNQHIEESRQLLSYALIHPATSLEDR
SALAMWLNHLEDRTSTSFGSQNRGRSDSVDYGQTHYYHQRQNSDDKLNGWQNSRDSGICISASNWQDKSL
GCENGHVPLYSSSSVPATINTIGTGASTNVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKG
ARHKIVISIQKLKERQNLLKSLERDIIEGGSLRTPLQELHQMILTPIKAYSSPSTTPEVRCREPSLMESP
SPDCKDSAAAVTSATASASAGASGGLQPPQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDE
ENISSYLQLLDKCLVHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAS
SVGSGMGRRNPRQYQIASRNVPSARLGLLGTSGFVSSNQRHTAANPTIMKQGRQNLWFANPGGSNSMPSR
THSSVQKTRSLPVHTSPQNMLMFQQPEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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