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Report for CCDS26834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26834.1 Public Mus musculus 14 Rarb 23 108 98 CCDS HistoryNCBI Gene:218772Re-query CCDS DB by CCDS ID:26834.1Re-query CCDS DB by GeneID:218772See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063750.7 ENSMUSP00000067694.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063750.7Link to Ensembl Protein Viewer:ENSMUSP00000067694.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063750Re-query CCDS DB by Protein ID:ENSMUSP00000067694
Original member Current member NCBI NM_011243.2 NP_035373.1 Accepted alive Link to Nucleotide Sequence:NM_011243.2Link to Protein Sequence:NP_035373.1Re-query CCDS DB by Nucleotide ID:NM_011243Re-query CCDS DB by Protein ID:NP_035373Link to BLAST:NP_035373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035373.1 448 P22605-3 448 100% 0 0

Chromosomal Locations for CCDS 26834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 16432071 16432267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16434165 16434323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16435054 16435258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16436734 16436910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16443678 16443838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16508934 16509075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16548414 16548562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16574858 16575014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCCGGGCAGATCCTGGATTTCTACACCGCGAGCCCTT
CCTCCTGCATGCTGCAGGAAAAGGCTCTCAAAGCCTGCCTCAGTGGATTCACCCAGGCCGAATGGCAGCA
CCGGCATACTGCTCAATCCATCGAGACACAGAGTACCAGCTCTGAGGAGCTCGTCCCGAGCCCACCATCT
CCACTTCCTCCTCCTCGGGTGTACAAGCCCTGCTTCGTTTGCCAGGACAAGTCATCGGGCTACCACTATG
GCGTCAGTGCCTGCGAGGGGTGCAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAACATGATCTACACTTG
CCATCGAGATAAGAACTGCGTCATTAACAAGGTCACTAGGAACCGATGCCAGTACTGCCGCCTGCAGAAG
TGCTTTGAAGTGGGCATGTCCAAAGAGTCTGTTAGGAATGACAGGAACAAGAAAAAGAAGGAGCCTTCAA
AGCAGGAATGCACAGAGAGCTATGAGATGACAGCGGAGCTAGACGACCTCACTGAGAAGATCCGGAAAGC
CCACCAGGAAACCTTTCCCTCACTCTGCCAGCTGGGTAAATACACCACGAATTCCAGCGCTGACCACCGG
GTCCGATTGGACTTGGGCCTCTGGGACAAATTCAGTGAGCTGGCCACCAAGTGCATTATTAAGATCGTGG
AGTTCGCCAAGCGTCTGCCGGGCTTCACAGGTCTGACCATCGCAGACCAGATCACCCTGCTCAAAGCCGC
CTGCTTGGATATCTTGATTCTCAGAATTTGTACCAGGTATACCCCAGAGCAAGACACCATGACTTTCTCT
GATGGCCTTACACTAAATCGAACTCAGATGCACAATGCTGGCTTCGGTCCTCTGACTGACCTTGTGTTCA
CCTTTGCCAACCAGCTCCTGCCTTTGGAAATGGATGACACAGAAACAGGCCTTCTCAGTGCCATCTGTTT
AATCTGTGGAGACCGCCAGGACCTTGAGGAACCAACAAAAGTAGACAAGCTCCAAGAACCACTGCTGGAA
GCACTAAAGATTTACATTAGAAAACGACGACCCAGCAAGCCTCACATGTTTCCAAAGATCTTAATGAAAA
TCACAGATCTCCGCAGCATCAGCGCGAAAGGTGCCGAACGTGTAATTACCTTGAAAATGGAAATTCCTGG
ATCAATGCCACCTCTCATTCAGGAAATGCTGGAGAATTCTGAAGGACATGAACCCTTGACCCCAAGTTCA
AGTGGGAATATAGCAGAGCACAGTCCCAGCGTGTCCCCCAGCTCAGTGGAGAACAGTGGAGTCAGTCAGT
CACCACTGCTGCAGTGA

Translation (448 aa):
MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACLSGFTQAEWQHRHTAQSIETQSTSSEELVPSPPS
PLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK
CFEVGMSKESVRNDRNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHR
VRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFS
DGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLE
ALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
SGNIAEHSPSVSPSSVENSGVSQSPLLQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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