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Report for CCDS26754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26754.1 Public Mus musculus 13 Shisal2b 23 108 98 CCDS HistoryNCBI Gene:77803Re-query CCDS DB by CCDS ID:26754.1Re-query CCDS DB by GeneID:77803See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043061.4 ENSMUSP00000042302.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043061.4Link to Ensembl Protein Viewer:ENSMUSP00000042302.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043061Re-query CCDS DB by Protein ID:ENSMUSP00000042302
Original member Current member NCBI NM_029984.1 NP_084260.1 Accepted alive Link to Nucleotide Sequence:NM_029984.1Link to Protein Sequence:NP_084260.1Re-query CCDS DB by Nucleotide ID:NM_029984Re-query CCDS DB by Protein ID:NP_084260Link to BLAST:NP_084260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084260.1 158 Q9D1Y9 158 100% 0 0

Chromosomal Locations for CCDS 26754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104845936 104846063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104858289 104858446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104863523 104863713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGAGCCAGAGCAGCCGCCTGTGCTCGGGCTACTACAGCCTCAACCGCAGCTTCGTGGAGCCTTTCCAGT
GCCCGCAGCGCGGCGATGGGGCCGCGCTGCTCTATTGCTGCGGCTTCGCAGACCTCAAGTACTGCTGCAG
CGAGCCGGGCAGCTACTTCCCCTACAAGCACAGCTACATGTGGAGCCTCAGTATTGGTGCTCTGGTTGGA
TTGGGAATCGCTGCCCTTGTCTTACTTGCCTTTGTCATCAGTGTCTGTGTCCTCTGCTACTTATTTCTGT
ACACAAAACCTCAAAGATTAGACAATGGCCTTAAACTTCAGCACCTAGAGACATCTTCTACCCTAGAAGG
CAACATAAACAGAAAAGCCAAAGGCCTCAATGCAGTATCAAATTCAACAAATGAGACCTTCTATGAAGCT
GACGATGGGACTCAAGAGAAAACAATGGATATAACACAAATCAATATTGCCTGTTAG

Translation (158 aa):
MSQSSRLCSGYYSLNRSFVEPFQCPQRGDGAALLYCCGFADLKYCCSEPGSYFPYKHSYMWSLSIGALVG
LGIAALVLLAFVISVCVLCYLFLYTKPQRLDNGLKLQHLETSSTLEGNINRKAKGLNAVSNSTNETFYEA
DDGTQEKTMDITQINIAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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