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Report for CCDS26701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26701.1 Public Mus musculus 13 F2r 23 108 98 CCDS HistoryNCBI Gene:14062Re-query CCDS DB by CCDS ID:26701.1Re-query CCDS DB by GeneID:14062See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059193.6 ENSMUSP00000061754.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059193.6Link to Ensembl Protein Viewer:ENSMUSP00000061754.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059193Re-query CCDS DB by Protein ID:ENSMUSP00000061754
Original member Current member NCBI NM_010169.4 NP_034299.2 Accepted alive Link to Nucleotide Sequence:NM_010169.4Link to Protein Sequence:NP_034299.2Re-query CCDS DB by Nucleotide ID:NM_010169Re-query CCDS DB by Protein ID:NP_034299Link to BLAST:NP_034299.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034299.2 430 P30558 430 100% 0 0

Chromosomal Locations for CCDS 26701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95603733 95604937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95618287 95618374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGGGCCCCGGCGCTTGCTGATCGTCGCCCTCGGCCTCAGCCTGTGCGGTCCCTTGCTGTCTTCCCGCG
TCCCTATGAGCCAGCCAGAATCAGAGAGGACAGATGCTACGGTGAACCCCCGCTCATTCTTTCTAAGGAA
TCCCAGTGAAAATACATTTGAACTGGTCCCCCTGGGGGATGAGGAGGAGGAGGAGAAAAATGAAAGCGTC
CTGCTGGAGGGTAGGGCAGTCTACTTAAATATAAGCCTCCCTCCTCACACGCCGCCTCCTCCCTTCATCT
CCGAGGACGCCTCCGGATATCTGACCAGCCCCTGGCTGACGCTCTTCATGCCCTCCGTGTACACGATTGT
GTTCATTGTCAGCCTTCCTCTGAACGTCCTGGCCATCGCAGTGTTCGTCTTGAGGATGAAGGTCAAGAAG
CCGGCCGTGGTGTACATGCTGCACCTGGCCATGGCCGACGTGCTCTTCGTGTCGGTGCTCCCCTTCAAGA
TCAGCTACTACTTCTCCGGCACTGATTGGCAGTTCGGGTCTGGAATGTGCCGCTTCGCCACCGCAGCGTT
TTACGGGAACATGTACGCCTCCATCATGCTCATGACGGTCATAAGCATTGACCGGTTCCTGGCGGTGGTG
TATCCGATCCAGTCCCTGTCCTGGCGCACTCTGGGCCGAGCCAACTTCACTTGCGTGGTCATTTGGGTGA
TGGCCATCATGGGGGTGGTGCCCCTTCTCCTCAAGGAGCAGACCACCCGAGTTCCGGGACTCAACATCAC
CACCTGCCACGACGTCCTCAGTGAGAACCTGATGCAAGGCTTTTACTCGTACTACTTCTCGGCCTTCTCC
GCCATCTTCTTTCTTGTGCCGTTGATCGTTTCCACGGTCTGCTACACGTCCATCATCCGGTGCCTGAGCT
CCTCCGCGGTTGCCAACCGGAGCAAGAAGTCGCGGGCTTTGTTCCTGTCTGCCGCGGTGTTCTGCATCTT
CATCGTCTGCTTTGGGCCCACCAACGTCCTCCTGATTGTGCACTACCTTTTCCTCTCCGACAGTCCTGGT
ACAGAGGCAGCCTACTTTGCTTACCTCCTCTGCGTCTGTGTGAGCAGCGTGAGCTGCTGCATCGATCCGT
TGATTTACTACTACGCCTCCTCCGAGTGCCAGAGGCACCTCTACAGCATCTTGTGCTGCAAAGAAAGCTC
TGATCCCAACAGTTGCAACAGCACCGGCCAGCTGATGCCGAGTAAAATGGATACCTGCTCTAGTCACCTG
AATAACAGCATATACAAAAAGCTATTAGCTTAG

Translation (430 aa):
MGPRRLLIVALGLSLCGPLLSSRVPMSQPESERTDATVNPRSFFLRNPSENTFELVPLGDEEEEEKNESV
LLEGRAVYLNISLPPHTPPPPFISEDASGYLTSPWLTLFMPSVYTIVFIVSLPLNVLAIAVFVLRMKVKK
PAVVYMLHLAMADVLFVSVLPFKISYYFSGTDWQFGSGMCRFATAAFYGNMYASIMLMTVISIDRFLAVV
YPIQSLSWRTLGRANFTCVVIWVMAIMGVVPLLLKEQTTRVPGLNITTCHDVLSENLMQGFYSYYFSAFS
AIFFLVPLIVSTVCYTSIIRCLSSSAVANRSKKSRALFLSAAVFCIFIVCFGPTNVLLIVHYLFLSDSPG
TEAAYFAYLLCVCVSSVSCCIDPLIYYYASSECQRHLYSILCCKESSDPNSCNSTGQLMPSKMDTCSSHL
NNSIYKKLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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