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Report for CCDS26684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26684.1 Public Mus musculus 13 Thbs4 23 108 98 CCDS HistoryNCBI Gene:21828Re-query CCDS DB by CCDS ID:26684.1Re-query CCDS DB by GeneID:21828See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022213.7 ENSMUSP00000022213.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022213.7Link to Ensembl Protein Viewer:ENSMUSP00000022213.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022213Re-query CCDS DB by Protein ID:ENSMUSP00000022213
Original member Current member NCBI NM_011582.3 NP_035712.1 Accepted alive Link to Nucleotide Sequence:NM_011582.3Link to Protein Sequence:NP_035712.1Re-query CCDS DB by Nucleotide ID:NM_011582Re-query CCDS DB by Protein ID:NP_035712Link to BLAST:NP_035712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035712.1 963 Q9Z1T2 963 100% 0 0

Chromosomal Locations for CCDS 26684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 92751751 92751812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92752354 92752493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92754268 92754440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92755089 92755285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92755369 92755417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92756408 92756586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92757922 92758115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92760532 92760584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92761465 92761583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92762760 92762919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92763176 92763283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92763529 92763633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92767154 92767306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92769532 92769600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92773157 92773294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92774681 92774883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92775117 92775168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92775483 92775565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92776099 92776207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92776865 92777112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92790682 92790885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 92794580 92794673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGCCGGCCCCACGCGCGGCCGCGGCCGCCTTCCTCCTGCTGCACCTGGTCCTGCAGCCGTGGCAGCGGA
CGAGCGCCCAGGCCACACCCCAGGTCTTTGATCTTCTACCGTCCTCCAGCCAGAGGCTGAACCCCAGCGC
CCTGCAGCCAGTCCTGACAGATCCCACCCTGCACGAAGTCTATCTCATCTCCACCTTCAAGCTGCAGAGT
AAAAGCTCAGCCACCATCTTTGGCCTCTACTCCTCAAGTGACAACAGCAAATACTTTGAATTCACTGTGA
TGGGACGGCTGAACAAAGCCATCCTCCGCTACCTGAAGAATGATGGAAAGATCCATCTGGTGGTGTTCAA
CAACTTGCAGCTGGCTGATGGGAGGCGCCACAGGGTTCTCCTGAGACTGAGCAATTTGCAGAGAGGAGAT
GGCTCTGTAGAACTCTACCTGGACTGCGCTCAGGCGGACTCGGTGCGCAACCTCCCCAGAGCCTTTTCTG
GCCTCACCCAGAACCCAGAGTCCATTGAATTGCGGACATTCCAGAGGAAGCCCCAGGACTTCTTGGAAGA
GCTGAAGCTGGTGGTGCGGGGCTCGCTGTTCCAGGTGGCCAGCCTCCAAGACTGCTTCCTGCAGCAGAGT
GAGCCTCTGGCTGCCACAAGCACAGGAGACTTTAATCGACAGTTCTTGGGTCAAATGACACAACTGAACC
AGCTCCTTGGAGAGGTGAAAGATCTTCTGAGGCAGCAGGTCAAGGAAACATCGTTTTTGCGAAACACCAT
TGCTGAATGCCAAGCTTGTGGTCCTCTCAGCTTTCAGTCCCCAACTCCAAACACACTGGTGCCCATAGCT
CCTCCAGCACCCCCAACTCGCCCAACACGCCACTGTGACTCCAGCCCTTGTTTCCGAGGTGTCCGATGTA
CGGACACCAGGGATGGCTTCCAGTGTGGACCCTGCCCAGATGGTTACACGGGAAACGGGATCACCTGCTC
TGACGTGGATGAGTGCAAATACCATCCCTGCTATCCAGGTGTGCGCTGTGTGAATTTGGCTCCGGGTTTC
AGATGTGACGCCTGTCCAGTAGGTTTCACAGGGCCCATGGTGCAGGGTGTCGGGATCAACTTTGCTAAAA
CAAACAAGCAGGTGTGCACTGATGTTGATGAGTGTCAGAATGGAGCGTGTGTTCTGAATTCTATCTGCAT
TAACACTTTGGGATCTTATCGCTGTGGGCCTTGCAAACCAGGGTACACTGGTGATCAGACGAGGGGATGC
AAGACTGAAAGGAGCTGCCGGAACCCAGAGCAGAACCCATGCAGTGTGCATGCGCAGTGCATTGAGGAGC
GGCAAGGGGATGTGACGTGTGTGTGTGGTGTTGGCTGGGCTGGTGACGGCTATGTCTGTGGAAAGGATGT
GGACATTGACAGTTACCCTGATGAAGAACTGCCATGCTCTGCCAGGAACTGCAAGAAGGATAACTGCAAG
TATGTGCCAAACTCTGGCCAGGAAGATGCAGACAGAGATGGCATCGGAGACGCGTGTGATGAGGATGCAG
ATGGAGATGGGATCTTGAATGAACAGGACAACTGTGTCCTGACTCACAATATAGACCAAAGGAACAGTGA
TAAAGATATCTTTGGGGATGCCTGTGACAACTGCCGGATGGTCCTGAATAATGACCAGAAGGATACTGAC
GGGGATGGGAGAGGAGACGCCTGTGATGACGACATGGATGGAGATGGAATAAAAAACATTTTGGACAACT
GTCCCAGAGTTCCCAACCGTGACCAGCAGGATCGGGATGGTGATGATGTCGGAGATGCTTGTGACAGCTG
TCCTGATGTCAGTAACCCTAACCAGTCGGATGTGGATAACGATCTGGTTGGGGACTCCTGTGACACCAAC
CAAGACAGTGACGGGGATGGCCACCAGGACAGCACAGACAACTGCCCCACAGTCATTAACAGCTCCCAGC
TGGACACTGACAAAGATGGGATCGGCGATGAATGTGATGACGATGACGATAACGATGGCATCCCAGACCT
GGTGCCTCCTGGCCCAGACAACTGCAGGCTCGTCCCCAACCCAGCCCAGGAAGATAGCAACAATGACGGG
GTAGGAGATATCTGTGAAGCTGACTTCGACCAGGACCAGGTCATCGATCACATTGATGTGTGCCCTGAGA
ATGCGGAGATCACCCTGACTGACTTCAGGGCCTACCAGACAGTGGTCCTGGACCCTGAAGGGGATGCTCA
GATCGACCCCAACTGGGTGGTCCTGAACCAGGGCATGGAAATTGTGCAGACCATGAACAGTGACCCTGGC
CTAGCTGTTGGGTACACGGCATTTAACGGAGTTGACTTTGAAGGGACCTTCCACGTAAACACCCAGACAG
ATGATGACTATGCTGGCTTTATTTTTGGTTACCAAGACAGCTCCAGCTTCTATGTAGTCATGTGGAAGCA
AACGGAGCAGACATACTGGCAGGCTACACCGTTCCGTGCAGTAGCAGAACCTGGTATTCAGCTCAAGGCT
GTGAAGTCTAAAACTGGCCCAGGGGAACATCTCCGAAACTCCCTGTGGCACACAGGGGACACCAGCGACC
AGGTCAGGCTGCTGTGGAAGGACTCCAGGAATGTGGGCTGGAAGGACAAGGTCTCCTACCGCTGGTTCCT
GCAGCATAGGCCCCAGGTGGGCTACATCAGGGTGCGCTTTTATGAAGGCTCGGAGTTGGTGGCTGACTCT
GGGGTCACCATAGACACCACCATGCGTGGAGGCCGACTTGGTGTGTTCTGCTTCTCTCAAGAAAACATCA
TCTGGTCCAACCTCAAGTACCGCTGCAACGACACCATACCAGAGGACTTCCAGGAGTTCCAGACCCAGAG
TTTCGACCGCTTGGATAATTGA

Translation (963 aa):
MPAPRAAAAAFLLLHLVLQPWQRTSAQATPQVFDLLPSSSQRLNPSALQPVLTDPTLHEVYLISTFKLQS
KSSATIFGLYSSSDNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRVLLRLSNLQRGD
GSVELYLDCAQADSVRNLPRAFSGLTQNPESIELRTFQRKPQDFLEELKLVVRGSLFQVASLQDCFLQQS
EPLAATSTGDFNRQFLGQMTQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVPIA
PPAPPTRPTRHCDSSPCFRGVRCTDTRDGFQCGPCPDGYTGNGITCSDVDECKYHPCYPGVRCVNLAPGF
RCDACPVGFTGPMVQGVGINFAKTNKQVCTDVDECQNGACVLNSICINTLGSYRCGPCKPGYTGDQTRGC
KTERSCRNPEQNPCSVHAQCIEERQGDVTCVCGVGWAGDGYVCGKDVDIDSYPDEELPCSARNCKKDNCK
YVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNIDQRNSDKDIFGDACDNCRMVLNNDQKDTD
GDGRGDACDDDMDGDGIKNILDNCPRVPNRDQQDRDGDDVGDACDSCPDVSNPNQSDVDNDLVGDSCDTN
QDSDGDGHQDSTDNCPTVINSSQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNNDG
VGDICEADFDQDQVIDHIDVCPENAEITLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPG
LAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKA
VKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADS
GVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQSFDRLDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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