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Report for CCDS26658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26658.1 Public Mus musculus 13 Nr2f1 23 108 98 CCDS HistoryNCBI Gene:13865Re-query CCDS DB by CCDS ID:26658.1Re-query CCDS DB by GeneID:13865See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091458.12 ENSMUSP00000089036.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091458.12Link to Ensembl Protein Viewer:ENSMUSP00000089036.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091458Re-query CCDS DB by Protein ID:ENSMUSP00000089036
Original member NCBI NM_010151.3 NP_034281.2 Updated not alive Link to Nucleotide Sequence:NM_010151.3Link to Protein Sequence:NP_034281.2Re-query CCDS DB by Nucleotide ID:NM_010151Re-query CCDS DB by Protein ID:NP_034281
Current member NCBI NM_010151.4 NP_034281.2 Accepted alive Link to Nucleotide Sequence:NM_010151.4Link to Protein Sequence:NP_034281.2Re-query CCDS DB by Nucleotide ID:NM_010151Re-query CCDS DB by Protein ID:NP_034281Link to BLAST:NP_034281.2

Chromosomal Locations for CCDS 26658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 78189733 78190013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78195162 78195689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78198120 78198573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCA
ACCCCGCAGCGCAGGCAGCCCGCGGCGGCGGCGGCGGCGAGCAGCAGCAGGCGGGCTCCGGCGCGCCGCA
CACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCAGGGGACAAGGGCCAGGGC
CCGCCCGGTTCAGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGC
ACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTA
CACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTC
AAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAGCGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCA
ATCCAGGCCAGTATGCACTCACAAACGGGGATCCTCTCAATGGCCACTGCTACCTGTCTGGCTACATTTC
TCTGCTGCTGCGCGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATC
ATGGGCATCGAGAACATCTGCGAGCTGGCAGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACA
TCCCGTTCTTCCCGGATCTGCAGATCACGGACCAGGTGTCTCTGCTGCGCCTCACCTGGAGCGAGCTGTT
CGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCCGCAGCCGGCCTGCAC
GCCTCGCCCATGTCCGCGGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGG
AGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTATTCACGTC
AGATGCTTGTGGCCTGTCGGATGCTGCCCACATCGAAAGCCTGCAGGAGAAATCACAGTGTGCCCTGGAG
GAGTATGTGAGAAGCCAGTACCCCAACCAGCCCAGCCGCTTTGGCAAACTGCTGCTGCGATTGCCCTCTC
TTCGCACAGTGTCCTCCTCTGTCATCGAGCAACTCTTCTTCGTACGTTTGGTAGGTAAAACTCCCATCGA
AACTCTCATCCGAGATATGTTGCTGTCAGGGAGCAGTTTCAACTGGCCTTACATGTCCATCCAGTGTTCC
TAG

Translation (420 aa):
MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGEQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQG
PPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRL
KKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNI
MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLH
ASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALE
EYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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