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Report for CCDS26636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26636.1 Public Mus musculus 13 Nkd2 23 108 98 CCDS HistoryNCBI Gene:72293Re-query CCDS DB by CCDS ID:26636.1Re-query CCDS DB by GeneID:72293See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022051.13 ENSMUSP00000022051.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022051.13Link to Ensembl Protein Viewer:ENSMUSP00000022051.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022051Re-query CCDS DB by Protein ID:ENSMUSP00000022051
Original member Current member NCBI NM_028186.5 NP_082462.3 Accepted alive Link to Nucleotide Sequence:NM_028186.5Link to Protein Sequence:NP_082462.3Re-query CCDS DB by Nucleotide ID:NM_028186Re-query CCDS DB by Protein ID:NP_082462Link to BLAST:NP_082462.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082462.3 461 Q8VE28-1 461 100% 0 0

Chromosomal Locations for CCDS 26636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73820960 73821537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73822690 73822817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73823272 73823356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73824249 73824393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73825066 73825161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73825684 73825811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73826877 73826937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73846913 73847016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73847270 73847305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73847403 73847427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGGGAAATTTCAGTCCAAGCACGCCGCAGCAGCCTGCAAGAGGAGAGAGAGTCCCGAAGGGGACAGCT
TCGTGGTGCCTGCGTACGGGAGCGGTCGCAGGGGAGCGGAAGAAACGGACCGGCGCGCGGGCAGCGGTGT
GGAACATCGCTCACGGGACAAGCAGGAGCTGCTCAATGGAGACCCTAAGGAGGGGCCTTTCTGGGACGAC
AAGGGTTCCCTAGAAGTTGTGCTGCCCCCTGAGAAGTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCA
GCACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGGTCCACTGAGACTTAGCAAGAAGCACTTGAACAT
TGACGCACTGCAGTGTGACGTCTCAGTGGAAGAAGACAACCGCCAAGAATGGACATTCACATTGTATGAC
TTTGACAACAGTGGGAAAGTCACCAGAGAGGACATGTCCAGCCTGATGCACACCATCTACGAGGTTGTCG
ATGCCTCTGTCAATCACTCCTCCGGCAGCAGCAAGACCCTTCGAGTGAAGCTAACTGTCAGCCCTGAACC
CTCCAGCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGGAGCCCACTCGTGGCAGAACAGAGATTGAG
CTCACAGATGAGCCCCGAGTGGCTGACAGAAGGCTATCCGCCTACAGCAGGAAGCCCAATGCTGATCCCC
AGCCCTGCTCTGTGCGAGTGCCCTACTGTGTGGATGAGAACACAGAGCGCAGAAACCACTACCTAGACCT
TGCTGGCATCGAGAACTACACATCTAAGTTTGGTCCTGGGTCACCACCTGAGCAGGCCAGGCAAGAACAT
CATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTCGGATGCCCACGCTATACACCACC
GCAGGTCTCAAGTCCTGGCTGAGCATGTCATACCAGCTAATGAGCCTGCCACCCGGGCCCTGGCTGCACA
GCCCCGGATCAAGGGGCAGGAGAAGCAGTTCCTCAGGTCTCCTAAGGGTCCAGGAAAACCTCTTGGGACA
CCAGGCAGTGGCAAGCCAGGGAAAGCTCTCAGCTATTGCCTGCAGGCCGTGCCATTGCCCCAGAGTGCTC
AGGATGGCCACCACCTTCCTCAGCCCCCACCACAGCCTCCACCGCAGCCCTATGGTCACAAGCGGTACCG
GCAGAAAGCCAGAGAAGGCCACTCACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGAGCATGAAGTA
GTACGGGACCTGCCTCCCATGCTGGGGCCTGAGGGCTATGTGATGCCTGTGGTCCAGAGGCATGAACACC
ACCATCACCATGAGCACCACCACCATCACCACCACCACCACTTCCACCCATCCTAG

Translation (461 aa):
MGKFQSKHAAAACKRRESPEGDSFVVPAYGSGRRGAEETDRRAGSGVEHRSRDKQELLNGDPKEGPFWDD
KGSLEVVLPPEKSEGHEGQGQLFSTDDGEKAASREGPLRLSKKHLNIDALQCDVSVEEDNRQEWTFTLYD
FDNSGKVTREDMSSLMHTIYEVVDASVNHSSGSSKTLRVKLTVSPEPSSKKECPLTGQDREPTRGRTEIE
LTDEPRVADRRLSAYSRKPNADPQPCSVRVPYCVDENTERRNHYLDLAGIENYTSKFGPGSPPEQARQEH
HGRATHIPSRSRSQESDAHAIHHRRSQVLAEHVIPANEPATRALAAQPRIKGQEKQFLRSPKGPGKPLGT
PGSGKPGKALSYCLQAVPLPQSAQDGHHLPQPPPQPPPQPYGHKRYRQKAREGHSPLKGHGQPTMVEHEV
VRDLPPMLGPEGYVMPVVQRHEHHHHHEHHHHHHHHHFHPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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