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Report for CCDS26604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26604.1 Public Mus musculus 13 Or9s18 23 108 98 CCDS HistoryNCBI Gene:258816Re-query CCDS DB by CCDS ID:26604.1Re-query CCDS DB by GeneID:258816See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058907.3 ENSMUSP00000062692.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058907.3Link to Ensembl Protein Viewer:ENSMUSP00000062692.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058907Re-query CCDS DB by Protein ID:ENSMUSP00000062692
Original member Current member EBI ENSMUST00000214214.1 ENSMUSP00000149328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214214.1Link to Ensembl Protein Viewer:ENSMUSP00000149328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214214Re-query CCDS DB by Protein ID:ENSMUSP00000149328
Original member Current member NCBI NM_146819.2 NP_667030.2 Accepted alive Link to Nucleotide Sequence:NM_146819.2Link to Protein Sequence:NP_667030.2Re-query CCDS DB by Nucleotide ID:NM_146819Re-query CCDS DB by Protein ID:NP_667030Link to BLAST:NP_667030.2

Chromosomal Locations for CCDS 26604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 65152226 65153152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGACAAATTTTACACGTGTCTCAGAGTTTATTCTACTTGGATTCAGAGGAGGTCCTGGTATACAAATGT
TG
CTATTTCTGATTTTTTTATTTTTGTATGTTATAGCAGTGGTGGGGAATTTTGGCATGATTATAATTAT
C
AGGATGGATGCACACCTCCATACTCCTATGTATGCCTTCCTCCAGAGCCTTTCCTTTTTGGACATCTGC
TAT
TCTTCCACAATTGCTCCTAGAGCTCTGATAAACTGCTTGAAACAGGATCATACAATATCCTTTAGTG
GG
TGTGCCACACAATTCTTTTTTTTGTCTCTTTTTGGTACCACAGAAGCATTTCTCCTGGCTGCCATGGC
C
TATGACCGCTTCATTGCTATCTGTAACCCTCTTCTATACTCTGTGAGTATGTCCCACTGGGTCTGTGGA
TTG
TTGGTATCAGGGTCCTATTCATGGGGTGCAGTGAATGCTGTCACGCAAACCACAATGACCTTCACTT
TG
ACTTTTTGTGGGTCCAATGAGATCAATGACTTCTTCTGTGACGTCCCACCACTCTTATCCCTCTCATG
T
TCAGACACTTTTATAAACCAGCTGGTTCTTCTTGCTTTATGTGGTTCCATTATTGTCAGTACCTTCTTG
ACT
GTTTTTGTCTCATACATCTATATCATTTCAACAATATTGAAGATCCGCACAGTGCAGGGACGACAGA
AA
GCTTTCTCCACGTGTGCCTCCCACTTGATTGGTGTCTGCTTGTTTTTTGGTACTGTTTTCTTCATGTA
T
GCACAGCCCAGTGCTGTCTCCTCCATGGAGCAGAGCAAAGTGGTGTCTATCTTCTACACTATTGTCATT
CCC
ATGTTGAACCCCCTCATATACAGCCTGAGGAACAAAGATGTCAAACAAGCACTGAAGAGAAGCAAGC
AG
AGATTTTGTTCCTGA


Translation (308 aa):
MTNFTRVSEFILLGFRGGPGIQMLLFLIFLFLYVIAVVGNFGMIIIIRMDAHLHTPMYAFLQSLSFLDIC
Y
SSTIAPRALINCLKQDHTISFSGCATQFFFLSLFGTTEAFLLAAMAYDRFIAICNPLLYSVSMSHWVCG
L
LVSGSYSWGAVNAVTQTTMTFTLTFCGSNEINDFFCDVPPLLSLSCSDTFINQLVLLALCGSIIVSTFL
T
VFVSYIYIISTILKIRTVQGRQKAFSTCASHLIGVCLFFGTVFFMYAQPSAVSSMEQSKVVSIFYTIVI
P
MLNPLIYSLRNKDVKQALKRSKQRFCS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser