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Report for CCDS26601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26601.1 Public Mus musculus 13 Cdk20 23 108 98 CCDS HistoryNCBI Gene:105278Re-query CCDS DB by CCDS ID:26601.1Re-query CCDS DB by GeneID:105278See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021939.7 ENSMUSP00000021939.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021939.7Link to Ensembl Protein Viewer:ENSMUSP00000021939.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021939Re-query CCDS DB by Protein ID:ENSMUSP00000021939
Original member Current member NCBI NM_053180.2 NP_444410.1 Accepted alive Link to Nucleotide Sequence:NM_053180.2Link to Protein Sequence:NP_444410.1Re-query CCDS DB by Nucleotide ID:NM_053180Re-query CCDS DB by Protein ID:NP_444410Link to BLAST:NP_444410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444410.1 346 Q9JHU3-1 346 100% 0 0

Chromosomal Locations for CCDS 26601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64432596 64432670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64432977 64433090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64436118 64436306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64436493 64436614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64436766 64436828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64437389 64437512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64437877 64438032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64438781 64438978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGACCAGTATTGCATCCTCGGTCGCATCGGGGAGGGCGCCCACGGCATCGTCTTCAAAGCCAAGCACG
TAGAGACTGGCGAGATCGTTGCCCTCAAGAAGGTGGCCTTGCGGCGGCTGGAGGATGGTATTCCTAACCA
GGCCCTCAGAGAAATCAAGGCTCTGCAGGAGATAGAGGACAGTCAATATGTGGTGCAGCTGAAGGCTGTG
TTCCCACATGGTGCGGGCTTTGTGCTGGCTTTCGAATTTATGCTGTCGGACCTGGCAGAGGTGGTGCGCC
ATGCCCAGAGGCCCCTGGCCCCAGCACAAGTCAAGAGCTACCTGCAGATGCTGCTCAAAGGTGTTGCGTT
TTGCCATGCCAACAACATTGTGCATCGGGACCTGAAGCCTGCTAACCTGCTCATCAGTGCCTCAGGCCAG
CTCAAGATAGCTGACTTTGGCCTGGCCCGGGTCTTCTCTCCGGATGGTGGTCGCCTCTACACACATCAGG
TGGCCACCAGGTGGTACCGAGCTCCTGAACTCCTGTATGGCGCTCGGCAGTATGACCAGGGCGTTGACCT
ATGGGCTGTGGGCTGCATCATGGGAGAGCTGTTGAATGGGTCCCCCCTGTTCCCGGGCGAAAACGACATT
GAACAACTGTGCTGTGTGCTTCGCATCCTGGGTACCCCGAGTCCTCGAGTCTGGCCGGAGATCACAGAGC
TGCCTGACTACAACAAGATCTCCTTCAAGGAGCAGGCACCAGTGCCCCTGGAGGAGGTGCTGCCTGATGC
CTCTCCCCAGGCCTTGGACCTGCTGGGCCAGTTCCTCCTCTACCCTCCACGACAGCGTATTGCAGCCTCC
CAGGCCCTTCTGCATCAGTACTTCTTCACAGCGCCTCTGCCTGCCCATCCATCCGAGCTGCCAATTCCTC
AGCGCCCAGGGGGACCTGCACCCAAGGCTCACCCAGGGCCCCCCCATGTCCACGACTTCCATGTGGATCG
ACCTCTTGAGGAGTCACTGTTGAACCCAGAACTGATTCGGCCCTTCATCCCAGAGGGGTGA

Translation (346 aa):
MDQYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAV
FPHGAGFVLAFEFMLSDLAEVVRHAQRPLAPAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQ
LKIADFGLARVFSPDGGRLYTHQVATRWYRAPELLYGARQYDQGVDLWAVGCIMGELLNGSPLFPGENDI
EQLCCVLRILGTPSPRVWPEITELPDYNKISFKEQAPVPLEEVLPDASPQALDLLGQFLLYPPRQRIAAS
QALLHQYFFTAPLPAHPSELPIPQRPGGPAPKAHPGPPHVHDFHVDRPLEESLLNPELIRPFIPEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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