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Report for CCDS26584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26584.1 Public Mus musculus 13 Ctsq 23 108 98 CCDS HistoryNCBI Gene:104002Re-query CCDS DB by CCDS ID:26584.1Re-query CCDS DB by GeneID:104002See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021888.8 ENSMUSP00000021888.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021888.8Link to Ensembl Protein Viewer:ENSMUSP00000021888.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021888Re-query CCDS DB by Protein ID:ENSMUSP00000021888
Original member Current member NCBI NM_029636.3 NP_083912.2 Accepted alive Link to Nucleotide Sequence:NM_029636.3Link to Protein Sequence:NP_083912.2Re-query CCDS DB by Nucleotide ID:NM_029636Re-query CCDS DB by Protein ID:NP_083912Link to BLAST:NP_083912.2

Chromosomal Locations for CCDS 26584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61035295 61035394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61036175 61036289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61037054 61037216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61037672 61037896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61038760 61038939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61039029 61039151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61039427 61039552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGACTCCTGCTTTCTTCCTGGTCATCCTGTGCTTGGGAATCCTGTCAGGTGTTTCAGCATTTGATCCCA
GTTTGGATGTCGAATGGAAAGAGTGGATGGGAAGCTTTGAAAAATTATACAGTCCGGAGGAAGAAGTACT
GAGAAGAGCAATATGGGAAGAAAATGTAAAAAGGATTAAACTGCATAACAGGGAGAATTCCCTAGGGAAG
AATACCTACACCATGGGATTAAATGGGTTTGCTGACATGACTGATGAAGAATTCATGAACATTGTAATTG
GTGCTACATTGCCAGTTGACAACACAAGAAAAAGTCTCTGGAAACGTGCACTTGGTAGTCCTTTTCCTAA
ATCTTGGTATTGGAAAGATGCTTTGCCCAAATTTGTTGATTGGCGAAATGAAGGCTATGTGACTCGTGTG
AGGAATCAGAGAAATTGTAATTCTTGTTGGGCTTTTCCTGTGACTGGTGCCATAGAAGGACAAATGTTCA
AGAAAACAGGCAAACTGATCCCACTGAGTGTACAGAACCTAGTGGACTGTTCTAGGCCTCAAGGCAATAG
AGGCTGTCGTTGGGGTAATACATACAATGGATTCCAGTACGTTTTGCACAATGGAGGTCTGGAGGCTCAG
GCAACCTATCCTTATGAAGGAAAAGAAGGACTATGCAGGTACAATCCTAAAAATTCTGCTGCTAAAATCA
CAGGATTTGTGGTCCTCCCAGAAAGTGAAGATGTCCTCATGGATGCTGTAGCAACTAAAGGCCCCATTGC
TACTGGAATTCATGTTGTCTCCAGTAGTTTTAGGTTCTATGATGGAGGTGTTTATTATGAACCAAATTGC
ACAAGTTCTGTGAATCATGCAGTTTTGATAATTGGCTATGGTTATGTGGGAAATGAAACGGATGGCAATA
ATTACTGGCTGATCAAGAACAGCTGGGGTAGACGATGGGGATTGAGTGGATATATGATGATTGCCAAAGA
CAGGAACAACCACTGTGCAATTGCTTCATTGGCCCAATACCCTACTGTGTGA

Translation (343 aa):
MTPAFFLVILCLGILSGVSAFDPSLDVEWKEWMGSFEKLYSPEEEVLRRAIWEENVKRIKLHNRENSLGK
NTYTMGLNGFADMTDEEFMNIVIGATLPVDNTRKSLWKRALGSPFPKSWYWKDALPKFVDWRNEGYVTRV
RNQRNCNSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLVDCSRPQGNRGCRWGNTYNGFQYVLHNGGLEAQ
ATYPYEGKEGLCRYNPKNSAAKITGFVVLPESEDVLMDAVATKGPIATGIHVVSSSFRFYDGGVYYEPNC
TSSVNHAVLIIGYGYVGNETDGNNYWLIKNSWGRRWGLSGYMMIAKDRNNHCAIASLAQYPTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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