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Report for CCDS26566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26566.1 Public Mus musculus 13 Trpc7 23 108 98 CCDS HistoryNCBI Gene:26946Re-query CCDS DB by CCDS ID:26566.1Re-query CCDS DB by GeneID:26946See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022023.12 ENSMUSP00000022023.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022023.12Link to Ensembl Protein Viewer:ENSMUSP00000022023.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022023Re-query CCDS DB by Protein ID:ENSMUSP00000022023
Original member Current member NCBI NM_012035.3 NP_036165.1 Accepted alive Link to Nucleotide Sequence:NM_012035.3Link to Protein Sequence:NP_036165.1Re-query CCDS DB by Nucleotide ID:NM_012035Re-query CCDS DB by Protein ID:NP_036165Link to BLAST:NP_036165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036165.1 862 Q9WVC5 862 100% 0 0

Chromosomal Locations for CCDS 26566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 56773764 56773933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56776117 56776192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56782511 56782591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56783623 56783844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56789602 56789797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56804513 56804777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56810384 56810617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56822425 56822641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56831286 56831450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56860890 56861072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56887339 56888116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56895493 56895494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGTTGGGGAGCAACACCTTCAAAAACATGCAGCGCCGGCACACCACCTTGAGGGAGAAGGGGCGCCGCC
AGGCCATCCGGGGTCCTGCCTACATGTTCAACGAGAAGGGCACGAGCCTGACCCCTGAGGAGGAGCGCTT
CCTGGACTCGGCTGAGTATGGCAACATACCAGTGGTCAGAAAAATGCTGGAGGAATCCAAGACCCTCAAT
TTCAACTGCGTGGACTACATGGGGCAGAACGCGCTGCAGCTGGCCGTGGGCAACGAGCACTTGGAGGTCA
CTGAACTGTTGCTGAAGAAAGAGAACTTGGCGCGGGTGGGCGACGCGCTGCTGCTGGCCATCAGCAAGGG
CTATGTGCGCATTGTGGAGGCCATCCTCAGCCATCCGGCCTTCGCGCAGGGCCAGCGCCTGACGCTCAGC
CCGCTGGAGCAGGAGCTGCGGGATGATGACTTCTATGCCTACGACGAGGATGGCACGCGCTTCTCCCACG
ACATCACACCCATCATCCTGGCGGCCCACTGCCAGGAGTATGAGATTGTGCATATCTTGCTGCTCAAGGG
TGCGCGCATTGAGCGGCCCCATGACTACTTCTGCAAGTGCAATGAGTGCACGGAGAAGCAGCGCAAGGAC
TCCTTCAGTCACTCGCGCTCCCGGATGAATGCCTACAAAGGACTGGCCAGTGCCGCCTACCTGTCCCTAT
CCAGTGAAGACCCTGTCCTCACTGCGCTGGAGCTAAGCAACGAGTTAGCCCGACTGGCCAACATTGAGAC
TGAATTTAAGAATGATTACAGGAAGTTATCTATGCAATGCAAGGATTTTGTGGTGGGCGTGCTGGACCTG
TGCCGAGACACAGAAGAGGTGGAAGCAATTTTAAATGGCGATGTGAACTTGCAAGTCTGGTCCGACCACC
ACCGTCCAAGTCTGAGCCGAATCAAACTCGCCATTAAGTACGAAGTCAAGAAGTTCGTTGCTCACCCTAA
CTGTCAGCAGCAATTGCTTACCATGTGGTATGAAAATCTCTCAGGCTTACGGCAACAGTCTATCGCTGTG
AAATTCCTGGCTGTCTTTGGAGTCTCCATAGGCCTCCCTTTTCTCGCCATAGCCTATTGGATTGCTCCGT
GCAGCAAGCTAGGACAAACCCTGAGGAGCCCTTTCATGAAGTTTGTGGCCCATGCAGTGTCTTTTACCAT
CTTCTTGGGACTGCTAGTTGTGAACGCCTCCGACCGGTTTGAGGGCGTTAAGACTCTGCCCAATGAGACC
TTCACAGACTACCCCAAACAGATCTTCAGAGTGAAAACCACACAGTTCTCCTGGACGGAGATGCTCATCA
TGAAGTGGGTCTTAGGAATGATCTGGTCCGAATGCAAGGAGATCTGGGAGGAGGGGCCGCGGGAGTACGT
GCTACACTTGTGGAACCTTCTGGATTTTGGCATGCTGTCCATCTTCGTGGCCTCCTTCACTGCGAGGTTC
ATGGCTTTCCTCAAGGCCAGCGAGGCCCAGCTGTACGTGGACCAGTACGTGCAGGATGTAACGCTGCACA
ACGTCTCACTTCCACCGGAAGTGGCCTACTTCACCTACGCCAGGGATAAGTGGTGGCCTTCAGACCCCCA
GATCATCTCGGAAGGGCTGTACGCCATTGCGGTTGTCCTCAGCTTCTCCCGGATCGCCTACATCCTGCCA
GCCAATGAGAGCTTCGGACCTTTGCAGATCTCCCTGGGAAGAACTGTGAAAGACATCTTCAAGTTCATGG
TCATTTTTATCATGGTATTTGTGGCCTTTATGATCGGAATGTTCAACCTGTACTCCTACTACCGAGGTGC
AAAGTACAACCCAGCGTTTACCACAGTTGAAGAAAGCTTTAAAACCTTGTTTTGGTCCATATTTGGCTTG
TCTGAGGTCATCTCGGTGGTGCTGAAATACGACCACAAGTTCATCGAGAATATTGGCTACGTGCTGTATG
GGGTTTATAATGTCACCATGGTGGTTGTACTACTCAACATGCTGATAGCCATGATCAACAACTCCTATCA
GGAAATCGAGGAAGACGCGGACGTGGAGTGGAAATTTGCTCGAGCGAAGCTCTGGCTTTCTTACTTTGAT
GAAGGAAGAACTCTCCCTGCTCCCTTTAACCTGGTGCCGAGCCCTAAATCCTTTTATTATCTCATAATGA
GAATCAAGATGTGCCTCATAGAGCTCTGCCAATCTAAGGCCAAACGCTGTGAAAACGACCTGGAAATGGG
CATGCTGAACTCCAAGTTCAGGAAGACTCGCTACCAGGCTGGCATGAGGAATTCTGAAAACCTGACAGCC
AATAGCACCTTCAGCAAGCCCACCAGATACCAGAAGATCATGAAGCGGCTCATAAAGAGATACGTGCTGA
AGGCCCAGGTGGACAGAGAGAACGATGAAGTCAATGAAGGTGAACTCAAGGAGATCAAACAAGACATCTC
AAGCCTTCGCTATGAGCTCCTGGAGGAGAAGTCTCAGGCTACAGGAGAGCTGGCAGACCTGATCCAGCAG
CTCAGCGAGAAGTTTGGGAAGAATCTGAACAAAGACCACCTGCGGGTGAACCAGGGCAAGGACATTTAG

Translation (862 aa):
MLGSNTFKNMQRRHTTLREKGRRQAIRGPAYMFNEKGTSLTPEEERFLDSAEYGNIPVVRKMLEESKTLN
FNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARVGDALLLAISKGYVRIVEAILSHPAFAQGQRLTLS
PLEQELRDDDFYAYDEDGTRFSHDITPIILAAHCQEYEIVHILLLKGARIERPHDYFCKCNECTEKQRKD
SFSHSRSRMNAYKGLASAAYLSLSSEDPVLTALELSNELARLANIETEFKNDYRKLSMQCKDFVVGVLDL
CRDTEEVEAILNGDVNLQVWSDHHRPSLSRIKLAIKYEVKKFVAHPNCQQQLLTMWYENLSGLRQQSIAV
KFLAVFGVSIGLPFLAIAYWIAPCSKLGQTLRSPFMKFVAHAVSFTIFLGLLVVNASDRFEGVKTLPNET
FTDYPKQIFRVKTTQFSWTEMLIMKWVLGMIWSECKEIWEEGPREYVLHLWNLLDFGMLSIFVASFTARF
MAFLKASEAQLYVDQYVQDVTLHNVSLPPEVAYFTYARDKWWPSDPQIISEGLYAIAVVLSFSRIAYILP
ANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYRGAKYNPAFTTVEESFKTLFWSIFGL
SEVISVVLKYDHKFIENIGYVLYGVYNVTMVVVLLNMLIAMINNSYQEIEEDADVEWKFARAKLWLSYFD
EGRTLPAPFNLVPSPKSFYYLIMRIKMCLIELCQSKAKRCENDLEMGMLNSKFRKTRYQAGMRNSENLTA
NSTFSKPTRYQKIMKRLIKRYVLKAQVDRENDEVNEGELKEIKQDISSLRYELLEEKSQATGELADLIQQ
LSEKFGKNLNKDHLRVNQGKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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