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Report for CCDS26536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26536.1 Public Mus musculus 13 Tspan17 23 108 98 CCDS HistoryNCBI Gene:74257Re-query CCDS DB by CCDS ID:26536.1Re-query CCDS DB by GeneID:74257See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026993.13 ENSMUSP00000026993.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026993.13Link to Ensembl Protein Viewer:ENSMUSP00000026993.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026993Re-query CCDS DB by Protein ID:ENSMUSP00000026993
Original member Current member NCBI NM_028841.3 NP_083117.2 Accepted alive Link to Nucleotide Sequence:NM_028841.3Link to Protein Sequence:NP_083117.2Re-query CCDS DB by Nucleotide ID:NM_028841Re-query CCDS DB by Protein ID:NP_083117Link to BLAST:NP_083117.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083117.2 270 Q9D7W4 270 99.6296% 0 1

Chromosomal Locations for CCDS 26536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54789595 54789681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54792609 54792659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54792740 54792886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54793195 54793365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54795053 54795178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54795411 54795458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54795966 54796082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54796157 54796222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGCCCGGCAAGCACCAGCAATTCCAGGACCCTGAGGTCGGCTGCTGCGGGAAATACTTCCTGTTTGGCT
TCAACATTGTCTTCTGGGTGCTGGGAGCCCTGTTCCTGGCCATTGGCCTCTGGGCCTGGGGTGAGAAGGG
CGTTCTCTCCAACATCTCGGCGCTGACAGATCTGGGCGGTCTTGACCCCGTGTGGCTGTTTGTGGTGGTG
GGGGGAGTCATGTCAGTGTTGGGCTTCGCCGGCTGCATTGGGGCCCTCCGGGAAAACACCTTCCTGCTCA
AGTTCTTCTCTGTGTTCCTCGGCCTCATCTTCTTCCTGGAGCTGGCCGCGGGGATCCTGGCCTTCGTCTT
CAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCCTACCGGGATGATCTC
GACCTTCAGAACCTTATCGACTTTGCTCAGGAATACTGGTCTTGCTGTGGTGCCCGAGGGCCCAATGACT
GGAACCTCAATATCTACTTCAACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGTGGGGTGCCCTTTTC
CTGCTGTGTTAGGGACCCAGCGGAAGATGTCCTCAATACCCAGTGTGGCTATGACATCCGACTCAAACTG
GAGCTCGAGCAGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCCAGTTTGAGAAGTGGCTACAAGACA
ACCTGATCGTGGTGGCCGGGGTCTTGGTGGGGATCGCCCTCCTCCAGATATTTGGCCTCTGCTTGGCCCA
GAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCAACTGGTGA

Translation (270 aa):
MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVV
GGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDL
DLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKL
ELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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