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Report for CCDS26461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26461.1 Public Mus musculus 13 Riok1 23 108 98 CCDS HistoryNCBI Gene:71340Re-query CCDS DB by CCDS ID:26461.1Re-query CCDS DB by GeneID:71340See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021866.9 ENSMUSP00000021866.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021866.9Link to Ensembl Protein Viewer:ENSMUSP00000021866.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021866Re-query CCDS DB by Protein ID:ENSMUSP00000021866
Original member Current member NCBI NM_024242.3 NP_077204.2 Accepted alive Link to Nucleotide Sequence:NM_024242.3Link to Protein Sequence:NP_077204.2Re-query CCDS DB by Nucleotide ID:NM_024242Re-query CCDS DB by Protein ID:NP_077204Link to BLAST:NP_077204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077204.2 567 Q922Q2 567 100% 0 0

Chromosomal Locations for CCDS 26461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38037461 38037531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38040073 38040274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38043051 38043141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38043909 38043978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38045273 38045315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38047245 38047337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38048880 38048992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38049076 38049156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38050224 38050310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38050808 38050945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38052269 38052372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38052878 38052984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38056162 38056227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38057137 38057256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38058688 38058741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38059940 38060092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38060755 38060865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGACTGCAGTCTGGACAGGATGGCTTCGGTGGTCCCCGGGCAATTTGACGACGCGGATTCCTCAGACA
GTGAAAACAAAGAACTGCAGCCAATCCATGCAGAAGATGGCGGCGTTCTACTTAAAAGCCTCCAGAATGC
TGCAGCAGAGGTGAAGGGCGACGCTGAGACCGATGAGGAAGACGACTATGATGATGATGATGATTGGTAC
TTGGACGATGCAACTGGAAAACTCACCAAGGGTTGTACCTGGAATGGCGGCAGTAACTATCAGGCAAACC
GACAGACTTCTAACTACAATTCAGCCAAAATGTCTACTCCAATTGACAAGTCCTTGCGAAAATTTGAAAA
TAAAATCAATCTAAATAAGCTGAATGTTACTGATTCTGTGACAAATAAAGTCACCGTAAAATTGAGACAA
AAGGAAGCAGAATCGTATCGAATTAAAGATAAGGCCGACAGAGCAACCGTAGAACAGGTTTTGGATCCCA
GAACAAGGATGATTTTATTCAAGTTGTTGCATAAAGACCACATATCAGAGATACATGGCTGTATTAGCAC
TGGAAAAGAAGCTAATGTATACTATGCTAGCACACCCAGTGGAGAGAGCAGAGCAATCAAAATATACAAA
ACTTCTATTTTGATGTTCAAAGATCGTGATAAGTATGTGACTGGGGAATTCAGGTTCCGGCGTGGCTATT
GTAAAGGAAACCCTAGGAAAATGGTGAGGACGTGGGCAGAGAAGGAGATGAGGAATTTGTGCAGGCTAAA
AACAGCAAACATACCATGTCCAGAACCAATCAGGCTAAGAAGTCATGTTCTTCTCATGGGCTTCATTGGC
AAGGATGACATGCCAGCCCCACTTTTGAAAAATGTCCAGCTGTCAGAGTCCAAGGCACGGGAGTTGTACC
TGCAGGTCATTCAGTACATGAGGAAAATGTATCAGGACGCTAGACTTGTCCACGCGGATCTCAGTGAATT
CAACATGCTGTACCATGGTGGAGATGTTTACATCATTGATGTTTCTCAGTCTGTGGAGCATGACCACCCA
CATGCATTGGAGTTCTTGAGAAAAGACTGTACCAATGTCAATGATTTCTTTTCCAAGCATGCTGTTGCAG
TGATGACCGTGCGGGAGCTCTTCGACTTCGTCACAGATCCCTCCATCACTGCTGACAACATGGATGCTTA
CCTGGAAAAGGCTATGGAAATAGCATCCCAGAGGACCAAGGAAGAAAAGACTAGCCAAGATCATGTGGAT
GAAGAGGTGTTCAAACAAGCATATATTCCCAGAACCTTAAACGAAGTAAAGAATTATGAGAGAGATGTGG
ACATCATGATGAGGTTAAAGGAAGAAGACATGGCTTTGAACACTCAGCAAGACAACATTCTATACCAGAC
TGTCATGGGATTGAAAAAAGATTTGTCAGGAGTCCAGAAGGTCCCCGCGCTCCTAGAAAGTGAAGTTAAG
GAAGAGACTTGTTTTGGTTCAGACGATGCTGGGGGCTCTGAGTGCTCCGACACAGTCTCTGAAGAGCAGG
AAGATCAAGCCGGATGCAGAAACCATATTGCTGACCCTGACATTGATAAAAAGGAAAGAAAAAAGATGGT
CAAGGAAGCCCAGAGAGAGAAGAGAAAAAATAAAATCCCTAAACATGTGAAAAAAAGAAAGGAAAAAACA
GCCAAGGCCAAAAAAGGCAAATAG

Translation (567 aa):
MDCSLDRMASVVPGQFDDADSSDSENKELQPIHAEDGGVLLKSLQNAAAEVKGDAETDEEDDYDDDDDWY
LDDATGKLTKGCTWNGGSNYQANRQTSNYNSAKMSTPIDKSLRKFENKINLNKLNVTDSVTNKVTVKLRQ
KEAESYRIKDKADRATVEQVLDPRTRMILFKLLHKDHISEIHGCISTGKEANVYYASTPSGESRAIKIYK
TSILMFKDRDKYVTGEFRFRRGYCKGNPRKMVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIG
KDDMPAPLLKNVQLSESKARELYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGDVYIIDVSQSVEHDHP
HALEFLRKDCTNVNDFFSKHAVAVMTVRELFDFVTDPSITADNMDAYLEKAMEIASQRTKEEKTSQDHVD
EEVFKQAYIPRTLNEVKNYERDVDIMMRLKEEDMALNTQQDNILYQTVMGLKKDLSGVQKVPALLESEVK
EETCFGSDDAGGSECSDTVSEEQEDQAGCRNHIADPDIDKKERKKMVKEAQREKRKNKIPKHVKKRKEKT
AKAKKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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