NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26402.1 Public Mus musculus 13 Prl7b1 23 108 98 CCDS HistoryNCBI Gene:75596Re-query CCDS DB by CCDS ID:26402.1Re-query CCDS DB by GeneID:75596See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080595.2 ENSMUSP00000079431.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080595.2Link to Ensembl Protein Viewer:ENSMUSP00000079431.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080595Re-query CCDS DB by Protein ID:ENSMUSP00000079431
Original member Current member NCBI NM_029355.2 NP_083631.1 Accepted alive Link to Nucleotide Sequence:NM_029355.2Link to Protein Sequence:NP_083631.1Re-query CCDS DB by Nucleotide ID:NM_029355Re-query CCDS DB by Protein ID:NP_083631Link to BLAST:NP_083631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083631.1 251 Q8CGZ9 251 100% 0 0

Chromosomal Locations for CCDS 26402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27601928 27602149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27602711 27602890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27604517 27604624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27606163 27606201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27606894 27607069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27610492 27610522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGAATACATCATTGACTCAACTGTGCTTCTGGGCACTGCAGATACTGTTGATGTCAAATCTTCTCCTGT
GGGAGGACGTGGTCTCTGTACCCACAATTGGCAGTGGATCAGGTGTTAGCGAAATGCTCACCGAAGACCT
TTTTGATGATGCCATCATACTGTCTCAGCACATCAATAGCCTTGCTATAGAGACACGCAGGATATTTCTA
TCCAATAATTTCTCATCAGACATGTTCATTACATTTACATTGCAATTTAACAGACATGATGAATTTGTTG
TCAATGGTCTCAACAGTTGCCACACTTTGCCACTCAAATCACCAAAGACAGAAAAGGAAGCCAAAAGGAT
CTCACTGCCAGACTTTATGAATATGATACTAAGTATACTACGAGCCTGGGACAACCCTCTGCATCACATG
GAGACAGAACTCAAGAGTATGCCAGGGGCGCCCTTTGCTATCCTTGCAAGAGTCAAAGATATTGAGGTAA
AAAATAAGATCCTTCTGGATCGCATCATGAAGATTGCCAAAAAGGTTAAATATGGATTTGAAGAAAATGA
AGTGTATCCTGCTTGGTCAGAGCTTGCATCCTTACAGTCAGCCAATGAAGAATCAAGATTTTTTGCTCTT
TATAAATTGTCCTATTGCCTATTTGTTGACACAGATAAGGTTGAACATTATCTTAAGCACTTGAAGTGTC
GGTATTTTGATGGTTACATGTGCCAAGACTCAGTAAACCAAATTAATCTTCTCTAA

Translation (251 aa):
MNTSLTQLCFWALQILLMSNLLLWEDVVSVPTIGSGSGVSEMLTEDLFDDAIILSQHINSLAIETRRIFL
SNNFSSDMFITFTLQFNRHDEFVVNGLNSCHTLPLKSPKTEKEAKRISLPDFMNMILSILRAWDNPLHHM
ETELKSMPGAPFAILARVKDIEVKNKILLDRIMKIAKKVKYGFEENEVYPAWSELASLQSANEESRFFAL
YKLSYCLFVDTDKVEHYLKHLKCRYFDGYMCQDSVNQINLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH