NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26357.1 Public Mus musculus 13 H2bc4 23 108 98 CCDS HistoryNCBI Gene:68024Re-query CCDS DB by CCDS ID:26357.1Re-query CCDS DB by GeneID:68024See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018246.5 ENSMUSP00000018246.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018246.5Link to Ensembl Protein Viewer:ENSMUSP00000018246.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018246Re-query CCDS DB by Protein ID:ENSMUSP00000018246
Original member Current member NCBI NM_001290380.1 NP_001277309.1 Accepted alive Link to Nucleotide Sequence:NM_001290380.1Link to Protein Sequence:NP_001277309.1Re-query CCDS DB by Nucleotide ID:NM_001290380Re-query CCDS DB by Protein ID:NP_001277309Link to BLAST:NP_001277309.1
Original member Current member NCBI NM_023422.3 NP_075911.2 Accepted alive Link to Nucleotide Sequence:NM_023422.3Link to Protein Sequence:NP_075911.2Re-query CCDS DB by Nucleotide ID:NM_023422Re-query CCDS DB by Protein ID:NP_075911Link to BLAST:NP_075911.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277309.1 126 Q6ZWY9 126 100% 0 0
NP_075911.2 126 Q6ZWY9 126 100% 0 0

Chromosomal Locations for CCDS 26357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23684232 23684612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCTGAGCCTGCGAAGTCCGCTCCCGCCCCGAAGAAGGGCTCCAAGAAGGCCGTGACCAAGGCCCAGA
AGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCGGTGTACGTGTACAAGGTGCTGAA
GCAAGTGCACCCCGACACCGGCATCTCCTCCAAGGCCATGGGCATCATGAACTCGTTCGTGAACGACATC
TTCGAGCGCATCGCGGGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGG
AGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCAA
GGCCGTCACCAAGTACACCAGCTCCAAGTGA

Translation (126 aa):
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDI
FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH