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Report for CCDS26269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26269.1 Public Mus musculus 13 Or2ad1 23 108 98 CCDS HistoryNCBI Gene:258527Re-query CCDS DB by CCDS ID:26269.1Re-query CCDS DB by GeneID:258527See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055298.5 ENSMUSP00000050942.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055298.5Link to Ensembl Protein Viewer:ENSMUSP00000050942.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055298Re-query CCDS DB by Protein ID:ENSMUSP00000050942
Original member Current member EBI ENSMUST00000216039.2 ENSMUSP00000149549.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216039.2Link to Ensembl Protein Viewer:ENSMUSP00000149549.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216039Re-query CCDS DB by Protein ID:ENSMUSP00000149549
Original member Current member NCBI NM_146534.1 NP_666745.1 Accepted alive Link to Nucleotide Sequence:NM_146534.1Link to Protein Sequence:NP_666745.1Re-query CCDS DB by Nucleotide ID:NM_146534Re-query CCDS DB by Protein ID:NP_666745Link to BLAST:NP_666745.1

Chromosomal Locations for CCDS 26269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21142111 21143055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAATAAACAACAAAAGCTCTGAGACAGACTTCATCCTTCTGGGATTTTCCAGTCGACCCCAACTGG
AGCACATCATCTCTGCAGTTGTCTTTGTCTTCTATATTGTGACTCTGGTAGGAAACACAACCATTATTCT
AGTGTCCTATCTGGACTCTCAGCTCCATACTCCCATGTATTTCTTCTTATCTAATTTGTCTTTCGTGGAC
CTCTGTTATACTACTAGCATTGTCCCACAGATGCTGGTAAATCTATGGGGCCCAAAGAAGTCTATTACAT
ACGGAGGGTGTGTACTCCAGTTCTTCTTTGCCCTGGACCTGGGAGCCACAGAATGTCTCCTCTTGGCTGT
GATGGCCTATGACCGCTATGCTGCTGTCTGTCAACCTCTTCACTACACAGTAATAATGCACCCTGTGCTT
TGCCAGAAGATGGTGCTGTCGGCCTGGTTGGGTGGTCTCGGCAGTGCGTTAATTCTTTGTTCCTTGACTT
TGAAGTTGCCAAGGTGTGGGCACCGGGAAGTGGATAATTTTTTCTGCGAAATGCCTGCATTGATCAAGAT
GGCTTGTGTTTACTCCAGAGTGATTGAGATCGTTGTGTTTACTCTTGGAGTCATATTTCTTCTAGTACCT
CTATCTCTAATCCTCATCTCCTATGCAGTTATCACTCAAGCTGTGATGAAGATCAAGTCAGCGACAAGGT
GGAGAAAGGTCCTCAATACATGTGGCTCCCACCTCACAGTTGTAACACTGTTTTACGGAACACTCATTTA
CATGTATATGAAACCACAGAACACCATATCTCATGAGGAAGGACAATTTTTTACCCTTTTTTACACCATT
GTCACCCCCAGCCTTAACCCTTTGATCTATACCTTAAGAAATAAAGATGTAAAGAATGCAGTGAAGAGAA
TTCTAGGAATGGACAAGCATTCTGGCAAAGTGTGA

Translation (314 aa):
MEINNKSSETDFILLGFSSRPQLEHIISAVVFVFYIVTLVGNTTIILVSYLDSQLHTPMYFFLSNLSFVD
LCYTTSIVPQMLVNLWGPKKSITYGGCVLQFFFALDLGATECLLLAVMAYDRYAAVCQPLHYTVIMHPVL
CQKMVLSAWLGGLGSALILCSLTLKLPRCGHREVDNFFCEMPALIKMACVYSRVIEIVVFTLGVIFLLVP
LSLILISYAVITQAVMKIKSATRWRKVLNTCGSHLTVVTLFYGTLIYMYMKPQNTISHEEGQFFTLFYTI
VTPSLNPLIYTLRNKDVKNAVKRILGMDKHSGKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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