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Report for CCDS26255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26255.1 Public Mus musculus 13 Rala 23 108 98 CCDS HistoryNCBI Gene:56044Re-query CCDS DB by CCDS ID:26255.1Re-query CCDS DB by GeneID:56044See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009003.8 ENSMUSP00000009003.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009003.8Link to Ensembl Protein Viewer:ENSMUSP00000009003.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009003Re-query CCDS DB by Protein ID:ENSMUSP00000009003
Original member Current member NCBI NM_019491.5 NP_062364.3 Accepted alive Link to Nucleotide Sequence:NM_019491.5Link to Protein Sequence:NP_062364.3Re-query CCDS DB by Nucleotide ID:NM_019491Re-query CCDS DB by Protein ID:NP_062364Link to BLAST:NP_062364.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062364.3 206 P63321 206 100% 0 0

Chromosomal Locations for CCDS 26255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 17882379 17882501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17888507 17888681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17893122 17893330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17896953 17897066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCTGCAAACAAGCCCAAGGGTCAGAATTCTTTGGCCTTACACAAAGTCATCATGGTGGGCAGTGGTG
GTGTGGGCAAGTCTGCCCTGACTCTGCAGTTCATGTACGACGAGTTTGTAGAGGACTATGAACCTACCAA
AGCGGACAGCTACAGGAAGAAGGTAGTCCTGGACGGGGAAGAAGTGCAGATCGACATCTTAGATACAGCG
GGGCAGGAGGACTATGCTGCAATTAGAGACAACTACTTCCGAAGTGGGGAGGGATTCCTCTGTGTCTTCT
CTATCACAGAGATGGAGTCCTTCGCAGCTACCGCGGACTTCAGGGAGCAGATTTTAAGAGTAAAAGAAGA
TGAGAATGTTCCATTTCTCCTGGTTGGTAACAAGTCAGATCTAGAAGATAAAAGGCAGGTTTCTGTAGAA
GAGGCAAAAAACAGAGCTGACCAGTGGAACGTTAACTATGTGGAGACGTCTGCTAAAACGCGCGCCAACG
TTGACAAGGTATTTTTTGATTTAATGAGGGAAATACGAGCCAGAAAGATGGAAGACAGCAAAGAAAAAAA
TGGAAAAAAGAAGAGGAAAAGTTTAGCCAAGAGAATCAGAGAAAGATGCTGCATTTTATAA

Translation (206 aa):
MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA
GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE
EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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