NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26195.1 Public Mus musculus 12 Pld4 23 108 98 CCDS HistoryNCBI Gene:104759Re-query CCDS DB by CCDS ID:26195.1Re-query CCDS DB by GeneID:104759See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063888.4 ENSMUSP00000067002.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063888.4Link to Ensembl Protein Viewer:ENSMUSP00000067002.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063888Re-query CCDS DB by Protein ID:ENSMUSP00000067002
Original member Current member NCBI NM_178911.4 NP_849242.1 Accepted alive Link to Nucleotide Sequence:NM_178911.4Link to Protein Sequence:NP_849242.1Re-query CCDS DB by Nucleotide ID:NM_178911Re-query CCDS DB by Protein ID:NP_849242Link to BLAST:NP_849242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849242.1 503 Q8BG07-1 503 100% 0 0

Chromosomal Locations for CCDS 26195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112760757 112760783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112762526 112762609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112763397 112763563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112763963 112764146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112764448 112764568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112764998 112765125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112766703 112766903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112767498 112767637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112767754 112767919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112768025 112768121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112768426 112768622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGACAAGAAGAAAGAGCACCCAGAGATGCGGATACCACTCCAGACAGCAGTGGAGGTCTCTGATTGGC
CCTGCTCCACATCTCATGATCCACATAGCGGACTTGGCATGGTACTGGGGATGCTAGCTGTACTGGGACT
CAGCTCTGTGACTCTCATCTTGTTCCTGTGGCAAGGGGCCACTTCTTTCACCAGTCATCGGATGTTCCCT
GAGGAAGTGCCCTCCTGGTCCTGGGAGACCCTGAAAGGAGACGCTGAGCAGCAGAATAACTCCTGTCAGC
TCATCCTTGTGGAAAGCATCCCTGAGGACTTGCCATTTGCAGCTGGCAGCCCCACTGCCCAGCCCCTGGC
CCAGGCTTGGCTGCAGCTTCTTGACACTGCTCGGGAGAGCGTCCACATTGCCTCGTACTACTGGTCCCTC
ACTGGACTGGACATTGGAGTCAATGACTCGTCTTCTCGGCAGGGAGAGGCCCTTCTACAGAAGTTCCAAC
AGCTTCTTCTCAGGAACATCTCTGTGGTGGTGGCCACCCACAGCCCAACATTGGCCAAGACATCCACTGA
CCTCCAGGTCTTGGCTGCCCATGGTGCCCAGATACGACAAGTGCCCATGAAACAGCTTACTGGGGGTGTT
CTACACTCCAAATTCTGGGTTGTGGATGGGCGACACATCTACGTGGGCAGTGCCAACATGGACTGGCGGT
CCCTGACTCAGGTGAAGGAACTTGGTGCAATCATCTACAACTGCAGCAACCTGGCTCAAGACCTTGAGAA
AACATTCCAGACCTACTGGGTGCTAGGGACTCCCCAAGCTGTTCTCCCTAAAACCTGGCCTCGGAACTTC
TCATCCCACATCAACCGCTTCCATCCCTTGCGGGGTCCCTTTGATGGGGTTCCCACCACGGCCTATTTCT
CGGCCTCCCCTCCCTCCCTCTGCCCGCATGGCCGGACCCGGGATCTGGACGCAGTGTTGGGAGTGATGGA
GGGTGCTCGCCAGTTCATCTATGTCTCGGTGATGGAGTATTTCCCTACCACGCGCTTCACCCACCATGCC
AGGTACTGGCCCGTGCTGGACAATGCGCTACGGGCAGCGGCCCTCAATAAGGGTGTGCATGTGCGCTTAC
TGGTCAGCTGCTGGTTCAACACAGACCCCACCATGTTCGCTTATCTGAGGTCCCTGCAGGCTTTCAGTAA
CCCCTCGGCTGGCATCTCAGTGGATGTGAAAGTCTTCATCGTGCCTGTGGGAAATCATTCCAACATCCCG
TTCAGCCGCGTGAACCACAGCAAGTTCATGGTCACAGACAAGACAGCCTATGTAGGCACCTCTAACTGGT
CAGAAGACTACTTCAGCCACACCGCTGGTGTGGGCCTGATTGTCAGCCAGAAGACCCCCAGAGCCCAGCC
AGGCGCAACCACCGTGCAGGAGCAGCTGAGGCAACTCTTTGAACGAGACTGGAGTTCCCACTATGCTATG
GACCTAGACAGACAAGTCCCGAGCCAGGACTGTGTCTGGTAG

Translation (503 aa):
MDKKKEHPEMRIPLQTAVEVSDWPCSTSHDPHSGLGMVLGMLAVLGLSSVTLILFLWQGATSFTSHRMFP
EEVPSWSWETLKGDAEQQNNSCQLILVESIPEDLPFAAGSPTAQPLAQAWLQLLDTARESVHIASYYWSL
TGLDIGVNDSSSRQGEALLQKFQQLLLRNISVVVATHSPTLAKTSTDLQVLAAHGAQIRQVPMKQLTGGV
LHSKFWVVDGRHIYVGSANMDWRSLTQVKELGAIIYNCSNLAQDLEKTFQTYWVLGTPQAVLPKTWPRNF
SSHINRFHPLRGPFDGVPTTAYFSASPPSLCPHGRTRDLDAVLGVMEGARQFIYVSVMEYFPTTRFTHHA
RYWPVLDNALRAAALNKGVHVRLLVSCWFNTDPTMFAYLRSLQAFSNPSAGISVDVKVFIVPVGNHSNIP
FSRVNHSKFMVTDKTAYVGTSNWSEDYFSHTAGVGLIVSQKTPRAQPGATTVQEQLRQLFERDWSSHYAM
DLDRQVPSQDCVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH