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Report for CCDS26183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26183.1 Public Mus musculus 12 Ckb 23 108 98 CCDS HistoryNCBI Gene:12709Re-query CCDS DB by CCDS ID:26183.1Re-query CCDS DB by GeneID:12709See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001304.8 ENSMUSP00000001304.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001304.8Link to Ensembl Protein Viewer:ENSMUSP00000001304.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001304Re-query CCDS DB by Protein ID:ENSMUSP00000001304
Original member Current member NCBI NM_021273.4 NP_067248.1 Accepted alive Link to Nucleotide Sequence:NM_021273.4Link to Protein Sequence:NP_067248.1Re-query CCDS DB by Nucleotide ID:NM_021273Re-query CCDS DB by Protein ID:NP_067248Link to BLAST:NP_067248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067248.1 381 Q04447 381 100% 0 0

Chromosomal Locations for CCDS 26183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111669563 111669741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111669825 111670014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111670162 111670285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111670873 111671044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111671215 111671347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111671425 111671579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111671766 111671958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGCCCTTCTCCAACAGCCATAATACGCAGAAGCTGCGCTTCCCGGCCGAGGATGAGTTCCCTGATCTGA
GCAGCCACAACAACCATATGGCCAAGGTGCTGACCCCGGAGCTGTACGCCGAGCTCCGTGCCAAGTGCAC
GCCGAGCGGCTTTACTTTGGACGACGCCATTCAGACTGGCGTAGACAATCCGGGCCACCCGTACATCATG
ACTGTGGGTGCAGTGGCGGGCGACGAGGAGAGTTACGACGTATTCAAGGACCTCTTCGACCCCATTATTG
AGGAGCGGCACGGCGGCTACCAGCCCAGTGATGAGCACAAGACCGACCTCAACCCAGACAACCTGCAGGG
TGGCGATGACCTGGACCCCAACTACGTGCTGAGCTCGCGAGTGCGCACAGGCCGCAGCATCCGCGGCTTC
TGTCTCCCCCCGCACTGCAGCCGCGGGGAGCGCCGCGCCATCGAGAAGCTGGCAGTAGAAGCTCTGTCCA
GCCTAGATGGCGACCTGTCTGGCAGGTACTACGCGCTCAAGAGCATGACTGAGGCGGAGCAGCAGCAGCT
CATTGACGACCACTTCCTCTTCGATAAGCCTGTGTCGCCTCTGCTGCTGGCCTCCGGCATGGCCCGGGAC
TGGCCGGATGCTCGTGGCATATGGCACAATGACAATAAGACTTTCCTGGTGTGGATTAACGAGGAGGACC
ACCTGCGAGTCATCTCCATGCAGAAGGGGGGCAACATGAAGGAAGTGTTCACCCGATTCTGCACCGGCCT
CACTCAGATCGAAACTCTCTTCAAGTCCAAGAACTATGAGTTCATGTGGAATCCTCACCTGGGCTACATC
CTCACATGCCCATCCAACCTGGGCACCGGACTGCGGGCAGGTGTGCACATCAAGCTGCCCCACCTGGGGA
AGCACGAGAAGTTCTCGGAGGTGCTCAAGCGGCTGCGGCTTCAGAAGCGAGGCACAGGTGGCGTGGACAC
CGCTGCTGTCGGTGGGGTGTTTGATGTCTCCAACGCTGACCGCCTGGGCTTCTCGGAGGTGGAACTGGTG
CAGATGGTGGTGGACGGAGTGAAACTACTCATTGAGATGGAGCAACGGCTGGAGCAGGGTCAGGCAATCG
ATGACCTCATGCCGGCCCAGAAGTGA

Translation (381 aa):
MPFSNSHNTQKLRFPAEDEFPDLSSHNNHMAKVLTPELYAELRAKCTPSGFTLDDAIQTGVDNPGHPYIM
TVGAVAGDEESYDVFKDLFDPIIEERHGGYQPSDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGF
CLPPHCSRGERRAIEKLAVEALSSLDGDLSGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARD
WPDARGIWHNDNKTFLVWINEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPHLGYI
LTCPSNLGTGLRAGVHIKLPHLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELV
QMVVDGVKLLIEMEQRLEQGQAIDDLMPAQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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