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Report for CCDS26178.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26178.2 Public Mus musculus 12 Tnfaip2 23 108 98 CCDS HistoryNCBI Gene:21928Re-query CCDS DB by CCDS ID:26178.2Re-query CCDS DB by GeneID:21928See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 26178.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26178.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102745.9 ENSMUSP00000099806.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102745.9Link to Ensembl Protein Viewer:ENSMUSP00000099806.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102745Re-query CCDS DB by Protein ID:ENSMUSP00000099806
Original member Current member NCBI NM_009396.2 NP_033422.2 Accepted alive Link to Nucleotide Sequence:NM_009396.2Link to Protein Sequence:NP_033422.2Re-query CCDS DB by Nucleotide ID:NM_009396Re-query CCDS DB by Protein ID:NP_033422Link to BLAST:NP_033422.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033422.2 691 Q61333 691 100% 0 0

Chromosomal Locations for CCDS 26178.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111444944 111445283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111445507 111446137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111447983 111448097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111448247 111448369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111448539 111448639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111449231 111449329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111449766 111449889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111450683 111450805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111451043 111451198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111451351 111451472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111453421 111453562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGCTGAAGATGGTGACTTTCTTCCAAGGGTTTCCTGGCCAGCAGTCTGTGCCAGGGACCCTGAACTTCG
CTGTAAGCCCCCAAAAGCCACGCTCTACATCCGAGGCTGAATCAGAGACCTCCATGTCTGAGGCGTCCTC
TGAGGACCTGATGCCATCCCCGGAGGCTCCCGATGGGGAGGAGGAGTCTGCGAAGAAGAAGGAGAAGAAG
TCCAAAGGACTGGCCAACATGTTCAGTGTCTTCACCAAAGGGAAAAAGAAAAAAAAGGACCAGCCCAGAT
TATCAGATCTGGAAGTGCAGCCCAAGCCCAGGCCCGAGTTAGATGGTCCACTGCCCACAGTGGAGGAGCT
CAAGGAGGCCCTGGAGCACGGGCGGCTGGAGGTGGCCTGGCAGGTGCTGGCGTTGGAGAGGCAGCTCGAG
GCTGCGGCAGCGGCGGGTGGCATGAGCAACGAGGAGCTGGTGTGGCGGCAGAGCAAGGTGGAGGCTCTGT
ACGTGCTGCTTTGCGACCAGGTGCTCGGGGTACTGCGGCGGCCGCTGGAGGCGGCGCCCGAGCGGCTGAG
CCAGGCGCTAGCCGTGGTGTCGCAGGAGGAGCTCGAGGACCGGCGGGCGTCCGGGGGACCCTTGGCGGCG
GCACTGGAGGCCACGCGCCCGCGGCGATGGCTGCAGCGGTGGAGGGGCGTCGTGGCGGAGGTGGCAGCGG
AACGTCTGGACGCGCAGCCGGCCACAGCGCCCGAGGGCCGCTCGGAGGCGGAGAGCAGGTTCCTGCACAT
GGGTCGCACCATGAAGGAGGACCTGGAGGTGGTGGTGGAGAGGCTGAAGCCGCTGTTCCCCGACGAGTTC
AACGTCGTGCGCACCTACGCCGAAAGCTACCACTACCACTTCGCCAGCCACCTGTGCGCCTTGGCGCAGT
TCGAGTTGTGTGAAAGGGATACCTACTTGCTGCTGCTCTGGGTGCAGAACCTCTACCCCAATGATATTCT
CAACAGCCCGAAGTTGGCACAGGAGCTTCAAGGTGTCGGGCTTGGGAGCCTCCTGCCCCCAAAGCAGATC
AGATTGCTGGAGGCCATGTTCTTGTCCAATGAGGTGACCAGCGTGAAGCAGCTCATGGCCCGAGCTTTAG
AGCTGGAGTCTCAGCGCTGGACCCAGGATGTGGCTCCCCAGAGCCTGGATGGCCACTGTCACAGTGAGCT
GGCCATCGACATTCTCCAGATCATTTCACAAGGCCAGACTAAGGCTGAGAACATCACTTCGGACGTGGGG
ATGCAGATAAAGCAGTTGCTGCTGGTGGAGCTGGCTGCACTACTGAGGAGCTACCAGCGCGCCTTTGATG
AGTTTCTAGAGAAGAGCAAACTCCTGAGGAATTACAGAGTCAACATCATGGCCAACATCAACAACTGCCT
GTTCTTCTGGACTTCCGTGGAGCAGAAATGGCAGATATCTCATGATTCTCTGAACCGCCTGCTGGAGCCT
TTGAAAGACCTCAAGGCCCATGGCTTCGACACCCTGCTCCAGAGCCTATTTTTGGACCTGAAGCCGCTGT
TTAAGAAGTTCACACAGACCCGTTGGGCAAATCCAGTTGAGACCCTGGAGGAAATCATCACTACTGTGAG
CAGCAGCCTGCCTGAATTCTCAGAGCTGCAGGACTGTTTCCGGGAGGAGCTCATGGAGACTGTGCACCTG
CACCTAGTGAAAGAATACATCATCAGGCTCTGCAAACGGCGCCTGGTCCTCAAGACGGCCGAGCAGCAGC
AGCAGCTGGCAAGGCACATCCTGGCCAACGCGGATGCCATTCAGGGGTTCTGCACTGAGAATGGCTCCAC
TGCAACCTGGCTGCACCGCGCCCTCCCTATGATTGCTGAGATCATTCGCCTGCAAGATTCCAGTGCCATT
AAGATCGAGGTGGCCACATACGCCACTTGGTACCCTGACTTCAGCAAAGGCCACCTGAACGCCATCCTGG
CCATCAAGGGCAATCTACCAAGCAGTGAAGTCAGGAGCATCCGGAACATACTGGACATCAACACGGGAGT
GCAGGAGCCTCCCAGGCCCCTGTTCTCCCTTATAAAGGTTACTTAG

Translation (691 aa):
MLKMVTFFQGFPGQQSVPGTLNFAVSPQKPRSTSEAESETSMSEASSEDLMPSPEAPDGEEESAKKKEKK
SKGLANMFSVFTKGKKKKKDQPRLSDLEVQPKPRPELDGPLPTVEELKEALEHGRLEVAWQVLALERQLE
AAAAAGGMSNEELVWRQSKVEALYVLLCDQVLGVLRRPLEAAPERLSQALAVVSQEELEDRRASGGPLAA
ALEATRPRRWLQRWRGVVAEVAAERLDAQPATAPEGRSEAESRFLHMGRTMKEDLEVVVERLKPLFPDEF
NVVRTYAESYHYHFASHLCALAQFELCERDTYLLLLWVQNLYPNDILNSPKLAQELQGVGLGSLLPPKQI
RLLEAMFLSNEVTSVKQLMARALELESQRWTQDVAPQSLDGHCHSELAIDILQIISQGQTKAENITSDVG
MQIKQLLLVELAALLRSYQRAFDEFLEKSKLLRNYRVNIMANINNCLFFWTSVEQKWQISHDSLNRLLEP
LKDLKAHGFDTLLQSLFLDLKPLFKKFTQTRWANPVETLEEIITTVSSSLPEFSELQDCFREELMETVHL
HLVKEYIIRLCKRRLVLKTAEQQQQLARHILANADAIQGFCTENGSTATWLHRALPMIAEIIRLQDSSAI
KIEVATYATWYPDFSKGHLNAILAIKGNLPSSEVRSIRNILDINTGVQEPPRPLFSLIKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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