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Report for CCDS26176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26176.1 Public Mus musculus 12 Cdc42bpb 23 108 98 CCDS HistoryNCBI Gene:217866Re-query CCDS DB by CCDS ID:26176.1Re-query CCDS DB by GeneID:217866See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041965.4 ENSMUSP00000042565.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041965.4Link to Ensembl Protein Viewer:ENSMUSP00000042565.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041965Re-query CCDS DB by Protein ID:ENSMUSP00000042565
Original member Current member NCBI NM_183016.2 NP_898837.2 Accepted alive Link to Nucleotide Sequence:NM_183016.2Link to Protein Sequence:NP_898837.2Re-query CCDS DB by Nucleotide ID:NM_183016Re-query CCDS DB by Protein ID:NP_898837Link to BLAST:NP_898837.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898837.2 1713 Q7TT50 1713 100% 0 0

Chromosomal Locations for CCDS 26176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111294101 111294232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111294894 111294964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111295056 111295161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111295739 111295856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111295948 111296065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111296209 111296293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111296380 111296477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111299083 111299682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111301810 111301872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111302014 111302230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111303830 111303911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111304972 111305111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111305666 111305802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111306442 111306547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111307779 111307856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111308108 111308197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111311487 111311566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111313327 111313421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111314424 111314572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111317459 111317564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111317908 111318032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111318436 111318541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111318629 111318873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111319978 111320088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111320964 111321206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111321471 111321604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111322803 111322922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111323007 111323173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111324984 111325063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111325960 111326208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111327416 111327616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111329139 111329232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111336026 111336174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111339821 111339916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111342026 111342109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111345532 111345623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111377097 111377271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5142 nt):
ATGTCGGCCAAGGTGCGGCTCAAGAAGCTGGAGCAGCTGCTCCTGGACGGGCCGTGGCGCAACGATAGCG
CCCTGAGCGTGGAGACGCTGCTGGACGTGCTGGTGTGCCTTTACACCGAGTGCAGCCACTCGGCGCTGCG
CCGCGACAAGTATGTGGCGGAGTTCCTCGAGTGGGCCAAGCCTTTCACCCAGCTCGTGAAGGACATGCAG
CTTCATCGAGAAGACTTCGAGATCATCAAAGTGATCGGGAGAGGAGCCTTTGGTGAGGTTGCTGTTGTCA
AAATGAAGAACACTGAACGAATTTATGCAATGAAAATTCTCAACAAATGGGAAATGCTAAAGAGAGCAGA
GACAGCTTGCTTTCGAGAAGAGCGTGACGTGCTGGTGAACGGCGACTGCCAGTGGATCACGGCTCTGCAC
TATGCCTTTCAGGATGAGAACTACCTGTACTTGGTCATGGATTACTATGTAGGTGGTGATCTGCTGACCC
TGCTGAGTAAGTTTGAAGACAAGCTTCCGGAAGACATGGCGAGGTTCTACATTGGCGAGATGGTGTTGGC
CATTGACTCGATCCACCAGCTCCACTATGTGCACAGAGACATCAAGCCCGACAACGTCCTTCTAGATGTG
AACGGTCACATCCGCCTGGCTGACTTTGGCTCGTGCTTGAAGATGAACGATGATGGCACTGTTCAGTCTT
CCGTGGCCGTGGGCACACCTGACTACATCTCACCAGAGATCCTGCAGGCCATGGAGGATGGCATGGGCAA
ATACGGGCCCGAGTGTGACTGGTGGTCGCTGGGCGTCTGCATGTATGAGATGCTATACGGAGAAACCCCG
TTCTACGCAGAGTCTCTGGTGGAGACATACGGGAAGATCATGAACCACGAGGAGCGGTTTCAGTTCCCAT
CCCATGTCACCGATGTCTCTGAAGAAGCAAAAGACCTTATCCAGAGACTAATATGCAGCAGAGAGCGCCG
ACTTGGGCAGAATGGAATAGAAGACTTTAAGAAACACGCATTCTTTGAAGGTCTGAATTGGGAGAATATA
CGAAACCTTGAAGCGCCCTACATTCCCGATGTGAGCAGCCCTTCGGACACGTCCAACTTCGATGTGGACG
ACGACATGCTGAGAAACATTGAAATCTTACCTCCCGGCTCTCACACGGGCTTCTCGGGACTGCATTTGCC
CTTCATCGGTTTCACATTCACGACGGAAAGCTGCTTTTCTGACCGGGGCTCTCTGAAGAGCATGACTCAG
TCTAACACGCTAACCAAAGACGAAGATGTGCAGCGGGACTTGGAGAACAGCTTGCAGATCGAAGCGTACG
AGCGAAGGATACGGAGGCTGGAGCAGGAGAAGCTGGAGCTCAGCCGGAAGCTGCAAGAATCCACCCAGAC
TGTGCAGTCCCTTCACGGTTCCACACGGGCCCTGGGCAACTCAAACCGCGACAAGGAAATCAAGAGGCTG
AATGAAGAGCTTGAACGCATGAAGAGTAAAATGGCAGATTCAAACAGGCTCGAACGCCAGCTGGAGGACA
CAGTGACACTTCGCCAGGAGCATGAGGACTCCACACACCGGCTGAAGGGCCTCGAGAAGCAGTACCGCCT
GGCCCGGCAGGAGAAGGAAGAATTGCACAAGCAATTGGTTGAGGCTTCAGAGCGATTGAAATCCCAGACC
AAAGAACTTAAAGACGCGCATCAGCAGCGAAAACGGGCCCTGCAGGAGTTCTCAGAGCTCAATGAGCGCA
TGTCGGAGCTCAGGTCGCTGAAGCAGAAGGTGTCCCGTCAGCTCCGGGACAAGGAGGAGGAGATGGAGGT
GGCCATGCAGAAGATCGACTCCATGCGGCAGGACCTCCGCAAGTCTGAGAAGTCCAGGAAAGAGCTGGAA
GCTCGGCTTGAGGACGCAGCTGCCGAGGCCTCTAAGGAGCGGAAGCTCCGAGAACACAGCGAGAGCTTCT
GTAAGCAGATGGAGCGCGAGCTCGAGGCCCTCAAGGTAAAGCAAGGAGGCCGGGGGCCAGGGGCCGCGTC
GGAACATCAGCAGGAGATCTCCAAAATCAGGTCGGAGCTCGAGAAGAAAGTCTTGTTCTACGAGGAGGAG
CTGGTGCGCCGAGAGGCCTCCCACGTGCTAGAAGTAAAGAACGTGAAGAAGGAAGTCCACGACTCCGAAA
GCCACCAGTTGGCCCTGCAGAAAGAGGTCCTGATGCTGAAAGACAAGTTAGAAAAGTCAAAGCGAGAACG
GCACAGTGAGATGGAGGAGGCCATAGGCACCGTGAAGGACAAGTACGAACGGGAGAGGGCCATGCTGTTC
GATGAGAACAAGAAGTTAACAGCAGAAAACGAAAAGCTTTGTTCCTTTGTGGATAAACTAACAGCCCAAA
ACAGACAGCTGGAAGATGAGCTGCAGGATCTGGCATCCAAGAAGGAGTCAGTTGCGCACTGGGAGGCGCA
GATCGCAGAGATCATTCAGTGGGTCAGCGATGAGAAAGATGCCAGAGGCTACCTTCAAGCCCTTGCTTCT
AAGATGACCGAAGAGCTTGAGACCTTGCGAAGTTCTAGTTTGGGATCCAGGACACTGGATCCACTCTGGA
AAGTTCGTCGGAGTCAGAAGCTGGACATGTCTGCACGGCTGGAATTGCAGTCTGCTCTTGAGGCCGAGAT
CCGTGCCAAACAGCTCGTTCAGGAGGAGCTGAGGAAGGTCAAAGACAGCAGCCTGGCCTTCGAAAGCAAA
CTGAAGGAATCGGAAGCGAAAAACAGGGAATTGTTAGAAGAAATGCAAAGTCTGAGGAAGAGGATGGAAG
AGAAGTTTAGAGCGGATACAGGGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACAC
TGCTCCTCTTGCACATGATCTGACTTTTAGAACCAGCTCAGCTAGTGACCAGGAAACACAGGCTTCAAAG
ATGGACTTGTCCCCATCAGTGTCTGTAGCCACGAGCACAGAGCAGCAGGAGGATATGGCTCGGCCACAGC
AGAGGCCGTCTCCTGTGCCACTGCCCAGCACGCAGGCCCTCGCCATGGCTGGACCGAAGCCCAAAGCCCA
CCAGTTCAGCATCAAGTCCTTCCCTAGCCCCACCCAGTGCAGCCACTGCACGTCCTTGATGGTCGGACTG
ATCCGACAGGGCTACGCCTGTGAGGTCTGTGCATTTTCCTGCCATGTGTCCTGCAAAGACAGCGCTCCCC
AGGTGTGCCCCATACCTCCTGAGCAGTCCAAGAGGCCTCTTGGCGTAGACGTGCAGAGGGGCATAGGCAC
GGCCTACAAGGGCTACGTCAAGGTCCCAAAGCCCACAGGCGTGAAGAAAGGATGGCAGAGGGCTTACGCC
GTGGTCTGTGACTGCAAACTCTTCCTGTACGACCTGCCAGAAGGGAAGTCGACCCAGCCCGGTGTCGTTG
CCAGTCAAGTCTTGGACCTCAGAGATGAGGAGTTTGCTGTGAGTTCAGTCCTGGCCTCAGATGTTATCCA
TGCTACACGCCGAGACATTCCGTGCATATTCAGGGTGACGGCCTCTCTCTTAGGTTCGCCTTCTAAGACC
AGCTCACTGCTCATCCTGACGGAGAACGAGAATGAAAAGAGGAAGTGGGTAGGGATCCTTGAAGGGCTGC
AGGCCATCTTGCATAAGAACCGGCTGAAGAGCCAGGTAGTGCACGTCGCACAGGAGGCCTACGACAGCTC
GCTGCCGCTCATCAAGGCCGTCCTGGCTGCTGCTATCGTGGATGGAGACAGGATTGCGGTCGGCCTGGAA
GAAGGGCTCTACGTCATTGAGCTCACCCGAGACGTGATCGTCCGCGCTGCTGACTGCAAGAAGGTGTACC
AGATCGAGCTGGCGCCCAAGGAGAAGATCGCCATCCTCCTGTGTGGCCGGAACCACCATGTGCACCTCTA
CCCCTGGTCCTCCTTCGACGGAGCAGAAGCGAGCAACTTTGACATCAAGCTCCCGGAAACAAAGGGCTGC
CAGCTCATAGCGACAGGGACGCTGAGGAAGAGCTCGTCCACCTGCCTGTTTGTCGCTGTGAAGCGACTAA
TCCTTTGCTACGAGATCCAGAGAACTAAGCCTTTCCACAGGAAGTTCAGTGAGCTGGTGGCTCCGGGACA
CGTGCAGTGGATGGCCGTGTTCAAGGACAGGCTCTGTGTTGGCTACCCCTCTGGGTTCTCTCTGTTGAGC
ATCCAGGGGGACGGGCCGCCTCTCGACCTGGTAAATCCCACTGACCCCTCGCTCGCGTTCCTCTCACAGC
AGTCTTTCGATGCCCTCTGTGCTGTGGAGCTCAAAAGTGAGGAGTACCTGCTTTGCTTCAGCCACATGGG
ACTGTACGTGGACCCTCAAGGTCGGAGGTCACGCATGCAGGAGCTCATGTGGCCTGCGGCTCCTGTCGCC
TGTAGTTGCAGCCCCACCCATGTCACAGTGTACAGCGAATACGGGGTGGATGTCTTCGACGTGCGCACCA
TGGAGTGGGTTCAGACCATCGGCCTGCGGAGGATAAGACCTCTGAACTCTGATGGCAGCCTCAACCTGCT
GGGCTGTGAGCCCCCTCGCCTCATCTACTTCAAAAACAAGTTCTCAGGAACAATCCTCAATGTGCCCGAC
ACCTCGGACAACAGCAAGAAGCAGATGCTGAGGACACGGAGCAAACGACGTTTTGTCTTCAAGGTTCCCG
AGGAAGAGCGGCTACAGCAGCGGCGAGAGATGCTCAGAGACCCCGAACTGCGATCCAAAATGATATCCAA
CCCAACCAACTTCAACCACGTGGCTCACATGGGTCCTGGGGATGGCATGCAGGTGCTCATGGACCTGCCT
CTGAGTGCTGCACCCACTGTCCAGGAGGAGAAGCAGGGCCCTACCCCAGCAGGCCTCCCCCGGCAGCCGC
CATCCAGGAGCAAGCCCTATGTCTCGTGGCCGTCGTCAGGTGGGTCCGAGCCTGGAGTGCCTGTGCCTCT
GAGGAGCATGTCCGACCCCGACCAGGATTTTGACAAAGAGCCTGACTCTGATTCCACCAAACACTCAACT
CCATCCAATAGCTCCAACCCTAGCGGCCCCCCAAGCCCCAACTCGCCCCATCGGAGCCAGCTCCCTATGG
AAGGCCTGGACCAGCCATCCTGTGACGCCTGA

Translation (1713 aa):
MSAKVRLKKLEQLLLDGPWRNDSALSVETLLDVLVCLYTECSHSALRRDKYVAEFLEWAKPFTQLVKDMQ
LHREDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDCQWITALH
YAFQDENYLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIHQLHYVHRDIKPDNVLLDV
NGHIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETP
FYAESLVETYGKIMNHEERFQFPSHVTDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGLNWENI
RNLEAPYIPDVSSPSDTSNFDVDDDMLRNIEILPPGSHTGFSGLHLPFIGFTFTTESCFSDRGSLKSMTQ
SNTLTKDEDVQRDLENSLQIEAYERRIRRLEQEKLELSRKLQESTQTVQSLHGSTRALGNSNRDKEIKRL
NEELERMKSKMADSNRLERQLEDTVTLRQEHEDSTHRLKGLEKQYRLARQEKEELHKQLVEASERLKSQT
KELKDAHQQRKRALQEFSELNERMSELRSLKQKVSRQLRDKEEEMEVAMQKIDSMRQDLRKSEKSRKELE
ARLEDAAAEASKERKLREHSESFCKQMERELEALKVKQGGRGPGAASEHQQEISKIRSELEKKVLFYEEE
LVRREASHVLEVKNVKKEVHDSESHQLALQKEVLMLKDKLEKSKRERHSEMEEAIGTVKDKYERERAMLF
DENKKLTAENEKLCSFVDKLTAQNRQLEDELQDLASKKESVAHWEAQIAEIIQWVSDEKDARGYLQALAS
KMTEELETLRSSSLGSRTLDPLWKVRRSQKLDMSARLELQSALEAEIRAKQLVQEELRKVKDSSLAFESK
LKESEAKNRELLEEMQSLRKRMEEKFRADTGLKLPDFQDSIFEYFNTAPLAHDLTFRTSSASDQETQASK
MDLSPSVSVATSTEQQEDMARPQQRPSPVPLPSTQALAMAGPKPKAHQFSIKSFPSPTQCSHCTSLMVGL
IRQGYACEVCAFSCHVSCKDSAPQVCPIPPEQSKRPLGVDVQRGIGTAYKGYVKVPKPTGVKKGWQRAYA
VVCDCKLFLYDLPEGKSTQPGVVASQVLDLRDEEFAVSSVLASDVIHATRRDIPCIFRVTASLLGSPSKT
SSLLILTENENEKRKWVGILEGLQAILHKNRLKSQVVHVAQEAYDSSLPLIKAVLAAAIVDGDRIAVGLE
EGLYVIELTRDVIVRAADCKKVYQIELAPKEKIAILLCGRNHHVHLYPWSSFDGAEASNFDIKLPETKGC
QLIATGTLRKSSSTCLFVAVKRLILCYEIQRTKPFHRKFSELVAPGHVQWMAVFKDRLCVGYPSGFSLLS
IQGDGPPLDLVNPTDPSLAFLSQQSFDALCAVELKSEEYLLCFSHMGLYVDPQGRRSRMQELMWPAAPVA
CSCSPTHVTVYSEYGVDVFDVRTMEWVQTIGLRRIRPLNSDGSLNLLGCEPPRLIYFKNKFSGTILNVPD
TSDNSKKQMLRTRSKRRFVFKVPEEERLQQRREMLRDPELRSKMISNPTNFNHVAHMGPGDGMQVLMDLP
LSAAPTVQEEKQGPTPAGLPRQPPSRSKPYVSWPSSGGSEPGVPVPLRSMSDPDQDFDKEPDSDSTKHST
PSNSSNPSGPPSPNSPHRSQLPMEGLDQPSCDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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