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Report for CCDS2617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2617.1 Public Homo sapiens 3 CHCHD4 24 110 108 CCDS HistoryNCBI Gene:131474Re-query CCDS DB by CCDS ID:2617.1Re-query CCDS DB by GeneID:131474See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295767.9 ENSP00000295767.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295767.9Link to Ensembl Protein Viewer:ENSP00000295767.5Re-query CCDS DB by Nucleotide ID:ENST00000295767Re-query CCDS DB by Protein ID:ENSP00000295767
Original member Current member NCBI NM_144636.3 NP_653237.1 Accepted alive Link to Nucleotide Sequence:NM_144636.3Link to Protein Sequence:NP_653237.1Re-query CCDS DB by Nucleotide ID:NM_144636Re-query CCDS DB by Protein ID:NP_653237Link to BLAST:NP_653237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653237.1 155 Q8N4Q1-2 155 100% 0 0

Chromosomal Locations for CCDS 2617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14112887 14113194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14116426 14116524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14121917 14121977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGGGAAGGATC
GA
ATCATATTTGTAACCAAAGAAGATCATGAAACTCCAAGCAGTGCAGAATTGGTGGCTGATGACCCCAA
C
GATCCATACGAGGAGCATGGATTGATACTGCCAAATGGAAACATTAACTGGAACTGCCCATGCCTTGGG
GGA
ATGGCCAGCGGTCCCTGTGGAGAACAGTTTAAGTCAGCCTTTTCCTGCTTCCACTATAGCACGGAGG
AG
ATCAAGGGGTCAGACTGTGTAGACCAGTTCCGGGCCATGCAGGAATGCATGCAGAAATACCCAGACCT
C
TATCCCCAAGAGGATGAGGATGAGGAAGAGGAAAGAGAGAAGAAGCCAGCAGAACAAGCAGAAGAAACA
GCT
CCCATTGAGGCCACTGCAACCAAAGAAGAGGAGGGATCAAGTTAA


Translation (155 aa):
MPVSYSSVTTRYYHRAGAEEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLG
G
MASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAEET
A
PIEATATKEEEGSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser