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Report for CCDS26143.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26143.2 Under review, update Mus musculus 12 Serpina11 23 108 98 CCDS HistoryNCBI Gene:380780Re-query CCDS DB by CCDS ID:26143.2Re-query CCDS DB by GeneID:380780See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 26143.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 2 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 26143.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074693.12 ENSMUSP00000074258.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074693.12Link to Ensembl Protein Viewer:ENSMUSP00000074258.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074693Re-query CCDS DB by Protein ID:ENSMUSP00000074258
Original member NCBI NM_199314.2 NP_955018.2 Updated not alive Link to Nucleotide Sequence:NM_199314.2Link to Protein Sequence:NP_955018.2Re-query CCDS DB by Nucleotide ID:NM_199314Re-query CCDS DB by Protein ID:NP_955018
Current member NCBI NM_199314.3 NP_955018.3 Pending alive Link to Nucleotide Sequence:NM_199314.3Link to Protein Sequence:NP_955018.3Re-query CCDS DB by Nucleotide ID:NM_199314Re-query CCDS DB by Protein ID:NP_955018Link to BLAST:NP_955018.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955018.3 424 Q8CIE0 424 99.5283% 0 2

Chromosomal Locations for CCDS 26143.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103980357 103980560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103982837 103982984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103984535 103984808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103985858 103986509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103989861 103989866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGAAGATGATGGGGCCAGTGTGGCTGTGGCTGTGGCTGCTGGTAGCCGAGGTCCTGCTTCCTGTCCATT
GTCAGCCATTTTCTGCCCATGGAGATAAGAGTCTGGGGGCATCTCAACCAGCCAGTCACCAGTCCCTGGA
GCCAGCACCCGCCTATCACAAGGTCACACCCACCATTACGAATTTTGCTTTGCGTCTATACAAGCAACTA
GCAGAGGAAGTAGCGGGAAACATCCTTTTCTCCCCTGTGAGCCTCTCCAGCAGCCTGGCTCTGCTGTCTC
TTGGGGCACATGCTGACACCCAGACTCAAATTCTGGAGAGCCTGGGCTTCAACCTCACAGAGACCCCAGC
AGCTGACGTCCACCGGGGTTTCCAGAGCCTCCTGCACACTCTTGACCTCCCCAGCCCCAAACTGGAACTG
AAACTGGGACATTTCCTGTTCCTAGACAGACAGCTGAAGCCTCAGCAACGTTTTCTGGACAGTGCCAAGG
AACTGTATGGAGCTCTGGCCTTTTCTGCCAACTTCACAGAAGCAGCTGCCACAGGGCAGCAGATCAATGA
CCTAGTGAGGAAGCAGACCTACGGGCAGGTGGTGGGCTGTCTCCCGGAGTTCAGCCATGACACTCTCATG
GTTCTCTTGAACTACATCTTCTTCAAAGCCAAGTGCAAGCATCCCTTTGATCGCTACCAGACCCGGAAGC
AGGAGAGCTTCTCCCTGGACCAGAGGACGCCACTCCGAATTCCCATGATGCGACAGAAGGAAATGCACAG
GTTCCTGTACGACCAGGAGGCGTCGTGCACTGTCCTCCAGATCGAGTACAGTGGCACCGCCTTGCTGCTG
CTGGTCCTCCCTGACCCTGGGAAGATGCAGCAGGTAGAGGCTGCCCTCCAGCCAGAGACGCTGAGAAGGT
GGGGCCAGCGGTTCCTGCCCAGTCTGTTGGATTTGCACCTGCCAAGGTTTTCAATTTCCGCAACTTACAA
CCTGGAAGAGATCCTGCCCCTCATTGGTCTTGGCAACCTATTCGACATGGAAGCTGACTTATCAGGAATT
ATGGGGCAACTCAACAAAACTGTCTCCAGGGTGTCACACAAGGCCATCGTGGACATGAACGAGAAGGGAA
CTGAGGCTGCAGCTGCCTCTGGCCTCCTGTCCCAGCCCCCAGCCCTGAACATGACATCAGCCCCACAGGC
CCACTATAACAGGCCCTTCCTGCTTCTGCTCTGGGAGGTGACCACCCAGAGTCTGCTCTTCTTGGGGAAA
GTGGTCAACCCAGCTGCTGGGTAA

Translation (427 aa):
MKMMGPVWLWLWLLVAEVLLPVHCQPFSAHGDKSLGASQPASHQSLEPAPAYHKVTPTITNFALRLYKQL
AEEVAGNILFSPVSLSSSLALLSLGAHADTQTQILESLGFNLTETPAADVHRGFQSLLHTLDLPSPKLEL
KLGHFLFLDRQLKPQQRFLDSAKELYGALAFSANFTEAAATGQQINDLVRKQTYGQVVGCLPEFSHDTLM
VLLNYIFFKAKCKHPFDRYQTRKQESFSLDQRTPLRIPMMRQKEMHRFLYDQEASCTVLQIEYSGTALLL
LVLPDPGKMQQVEAALQPETLRRWGQRFLPSLLDLHLPRFSISATYNLEEILPLIGLGNLFDMEADLSGI
MGQLNKTVSRVSHKAIVDMNEKGTEAAAASGLLSQPPALNMTSAPQAHYNRPFLLLLWEVTTQSLLFLGK
VVNPAAG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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