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Report for CCDS26129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26129.1 Public Mus musculus 12 Ddx24 23 108 98 CCDS HistoryNCBI Gene:27225Re-query CCDS DB by CCDS ID:26129.1Re-query CCDS DB by GeneID:27225See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044923.14 ENSMUSP00000040890.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044923.14Link to Ensembl Protein Viewer:ENSMUSP00000040890.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044923Re-query CCDS DB by Protein ID:ENSMUSP00000040890
Original member Current member NCBI NM_001364162.1 NP_001351091.1 Accepted alive Link to Nucleotide Sequence:NM_001364162.1Link to Protein Sequence:NP_001351091.1Re-query CCDS DB by Nucleotide ID:NM_001364162Re-query CCDS DB by Protein ID:NP_001351091Link to BLAST:NP_001351091.1
Original member Current member NCBI NM_001364163.1 NP_001351092.1 Accepted alive Link to Nucleotide Sequence:NM_001364163.1Link to Protein Sequence:NP_001351092.1Re-query CCDS DB by Nucleotide ID:NM_001364163Re-query CCDS DB by Protein ID:NP_001351092Link to BLAST:NP_001351092.1
Original member Current member NCBI NM_020494.4 NP_065240.2 Accepted alive Link to Nucleotide Sequence:NM_020494.4Link to Protein Sequence:NP_065240.2Re-query CCDS DB by Nucleotide ID:NM_020494Re-query CCDS DB by Protein ID:NP_065240Link to BLAST:NP_065240.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351091.1 857 Q9ESV0 857 100% 0 0
NP_001351092.1 857 Q9ESV0 857 100% 0 0
NP_065240.2 857 Q9ESV0 857 100% 0 0

Chromosomal Locations for CCDS 26129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103408212 103408477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103409928 103410057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103411129 103411317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103416196 103416271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103417278 103417793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103418064 103418217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103418962 103419483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103423872 103424592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGAAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTGGCACGTTCCAGAGGAAGGGCATCA
AGATTGTGGGGAAATGGAAGCAAGTGACGATCGACCCGAATCTGTTTGCAGATGGACAGATGGATGACCT
GGTGTGCTTTGAAGAGCTGACAGATTACCGTTTAGTCAAGAATCCCTCCCGTTTGTTCTCAAGTGAGGAG
ACAAAGAAGAGAAAGGCCCAGGCTGTTTCAGAAGAGGAAGAAGAGGAGGAAGGACAGTCCAGCTCCCCAA
AGAAAAAGATCAAGTTGAAGAAGCAGAGAGATGCGGCACGAGCTGCCGAAGGCGCTGCTGCCCAGAATGA
GTATGAAGTCAAAGCGTCCGAGCCAGAGGCTCAGGGAGAAGTCACTGCTTGTTCTGATCAAAAGGTCGGA
GGAGCCAAATCAGAAAGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAAAACAAAGGGAAAAAAAAATTGG
ATACTTTTCAGAGCACTTCCCCCAAATTGCCCAAAAAATCGAAGAAGACATGGATGGCTGAGGTGCACGA
CCAGAAGGCAGATGTGTCTGCCTGGAGGGACCTGTTTGTGCCCAAGGCTGTTCTGCGCGCTCTCAGCTTC
TTAGGCTTCTCTGCACCTACCCCAATCCAGGCTCTGACTTTGGCCCCTGCCATCCGTGACAAACTGGACA
TCCTTGGAGCTGCTGAGACAGGAAGCGGGAAAACTCTGGCTTTTGCCATCCCGATGATTCACTCAGTGCT
GCAGTGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTT
GGAGCTACAGCCCATCTTGGATCACCTTGCAAGGACAGAACTGAATCTGGAGTGTTGCCTGAGGAGGCCA
GAATTGAGACTGAAGCACAGCCCAGTGACTCTGGGGTCCAGGCCACACCTGAGACTAGTGCCTCTGCCTC
AGCCCAGACACTGCTCGTCTGTGATGATGATGCTGGTGAAGGACCTTCTTCCTTAGAGGAAAAGCCTGTC
CCCAAGCAAAATGAGGACGGAGAAGAAAAGTTTGATGCAGAACAGGCTGGAAAGTTAAAACAGGAGTTAT
GTGACCAAATTGCTATTTATAAAGTACACCCAAGGCGCCCTCTGCTTGGACTGGTGCTGACTCCTACTCG
AGAGCTGGCCATCCAGGTCAGACAGCACATCGATGCTGTGGCCAAGTTTACAGGGATTAATACAGCAATT
TTAGTTGGTGGAATGTCCACACAGAAACAGCAAAGGATGCTGAACCGCCATCCTGAGATTGTGATCGCCA
CCCCTGGTCGGCTCTGGGAGTTAGTTAAAGAAAAACACCCTCATTTGAGTAACCTTCGGCAGCTCAGGTG
CCTGGTCATAGATGAAGCTGATCGCATGGTTGAGAAAGGCCATTTTGCTGAACTCTCTCAGCTGCTAGAG
ATGCTAAATGACTCCCAGTACAACCCCAGTCGGCAGACTCTTGTTTTTTCTGCCACCCTAACCCTGGTAC
ACCAAGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAAGAAGATGGATAAAACCGACAAACTTGACCT
TCTCATGCAGAAGGTTGGCATGAGGGGCAAGCCGAAAGTCATTGACCTCACAAGGAACGAGGGTACAGTG
GAGACGCTAACGGAGACCAAGATCCACTGCGAGACAGATGAGAAAGACTTGTATCTCTACTACTTTCTCA
TGCAGTACCCAGGTCGTAGCCTGGTGTTTGCCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCTCCT
CAAGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTG
GAGCAGTTTGCTCGTCTGCAAGACTGTGTTCTCTTGGCAACAGATGTGGCAGCTCGAGGTCTGGATATTC
CTAAAGTTCAACATGTCATCCATTACCAGGTGCCTCGCACCTCAGAGATTTACATCCACCGAAGTGGTCG
GACTGCCCGCGCTGCCAGTGAAGGCCTCAGCTTGATGCTGATTGGGCCTGAGGATGTGATCAACTTCAAG
AAGATCTACAAAACTCTCCAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGATG
TGGTCAAGGAGCGGATCCGTCTAGCCCGACAGATTGAAAAAGCTGAATACCGGAACTTCCAGGCTTGTCT
GCACAACTCATGGATTGAGCAGGCGGCAGCAGCCCTAGAGATTGAGCTAGAAGAAGAGATGTACAAAGGA
GGAAAAGCTGACCAGCAAGAAGAACGTCGGCGACAGAAGCAGATGAAGATGCTGAAGCAGGAGCTACGCC
ATCTGCTCTCCCAGCCACTCTTCCAGGAGAACCTGAAGACCAGATACCCCACACAGTCTGGCAGGCCGCC
TCAGCCTGTGCTGGCCTCCAGGAATATCGAGTCTGCGCTGAGCTGCCTGTCTAGGCAGAAGAGGAGGAGG
AAGAAGCCAAAAGAACCCCGGGCACCACCACAGCCAGGTTCAAGCACGAGTTAA

Translation (857 aa):
MKVKETNSKPKLASRGTFQRKGIKIVGKWKQVTIDPNLFADGQMDDLVCFEELTDYRLVKNPSRLFSSEE
TKKRKAQAVSEEEEEEEGQSSSPKKKIKLKKQRDAARAAEGAAAQNEYEVKASEPEAQGEVTACSDQKVG
GAKSESLAQAAPRKKKNKGKKKLDTFQSTSPKLPKKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSF
LGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSVLQWHKMKAPPIPRSTGMPPREMRF
GATAHLGSPCKDRTESGVLPEEARIETEAQPSDSGVQATPETSASASAQTLLVCDDDAGEGPSSLEEKPV
PKQNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAI
LVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLE
MLNDSQYNPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRNEGTV
ETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNL
EQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFK
KIYKTLQKDEDIPLFPVQSKYMDVVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKG
GKADQQEERRRQKQMKMLKQELRHLLSQPLFQENLKTRYPTQSGRPPQPVLASRNIESALSCLSRQKRRR
KKPKEPRAPPQPGSSTS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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