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Report for CCDS26101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26101.1 Public Mus musculus 12 Ttc8 23 108 98 CCDS HistoryNCBI Gene:76260Re-query CCDS DB by CCDS ID:26101.1Re-query CCDS DB by GeneID:76260See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085109.9 ENSMUSP00000082190.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085109.9Link to Ensembl Protein Viewer:ENSMUSP00000082190.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085109Re-query CCDS DB by Protein ID:ENSMUSP00000082190
Original member Current member NCBI NM_029553.4 NP_083829.1 Accepted alive Link to Nucleotide Sequence:NM_029553.4Link to Protein Sequence:NP_083829.1Re-query CCDS DB by Nucleotide ID:NM_029553Re-query CCDS DB by Protein ID:NP_083829Link to BLAST:NP_083829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083829.1 505 Q8VD72-2 505 100% 0 0

Chromosomal Locations for CCDS 26101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98920670 98920783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98942218 98942338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98943303 98943366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98943462 98943621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98943825 98943914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98946569 98946613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98957281 98957366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98961402 98961489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98964497 98964607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98974642 98974781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98975977 98976151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98976427 98976549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98979802 98979885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98982458 98982574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGGCTCAGAGATGGAGCCACTGCTCCGGGCCTGGAGCTATTTTAGACGCAGGAAGTTCCAGCTCTGCG
CCGATCTATGCACGCAGATGCTGGAGAAATCCCCTTATGATCAGGCGGCTTGGATTTTGAAAGCACGGGC
GCTGACAGAGATGGTGTACATAGATGAAATTGATGTGGACCAGGAAGGAATTGCTGAAATGATCCTGGAT
GAAAATGCTATTGCTCAGGTCCCACGCCCTGGCACATCTTTGAAGCTCCCTGGCACTAACCAAACAGGAG
GACCGACTCAAGCTGTCAGGCCAATCACTCAAGCTGGAAGACCCATAACAGGTTTCCTTAGGCCCAGCAC
ACAGAGTGGAAGACCAGGTACAATGGAACAGGCCATCAGAACACCCAGAACTGCCTACACAGCACGACCT
ATCACTAGCTCATCTGGAAGATTCGTCAGACTGGGGACTGCTTCCATGCTTACAAGTCCCGATGGACCAT
TTATAAATTTATCTAGACTGAATTTAACAAAATATTCCCAGAAGCCTAAGTTGGCAAAGGCTCTATTTGA
ATATATTCTCCACCATGAAAACGATGTTAAGATGGCTTTGGATTTGGCGTCCCTTTCCACGGAGTATTCT
CAGTACAAGGACTGGTGGTGGAAGGTACAGATTGGAAAATGTTACTACAGGTTAGGAATGTACCGTGAAG
CAGAGAAACAGTTTAAATCAGCCTTGAAGCAGCAGGAAATGGTAGACACATTTCTCTATCTGGCAAAAGT
TTATATCATATTGGATCAACCTGTGACTGCTTTAAATCTATTTAAACAAGGCTTAGATAAGTTTCCAGGA
GAGGTGACCCTGCTTTGTGGAATTGCCAGGATCTATGAGGAAATGAATAACAGTTCATCTGCAGCAGAGT
ACTACAAAGAAGTTCTAAAACAAGACAATACTCACGTGGAAGCCATCGCCTGCATTGGAAGCAACCACTT
TTATTCTGACCAGCCAGAGGTTGCCCTTCGGTTTTACAGGCGCCTCTTGCAGATGGGAGTTTATAACTGC
CAGCTTTTCAACAACCTGGGCCTGTGCTGCTTCTATGCCCAGCAGTACGATATGACCCTGACCTCGTTTG
AACGTGCCCTTTCCCTGGCTGAAAATGAAGAAGAGGCAGCTGATGTCTGGTACAACCTGGGGCACATAGC
TGTGGGAATCGGAGATACAAACTTGGCCCACCAATGCTTCAGGCTGGCCCTGGTCCACAACAACCACCAT
GCTGAAGCCTACAACAACCTGGCAGTGCTGGAGATGCGGAAGGGTCACGTTGAACAGGCACGCGCGCTCT
TACAAACCGCATCGTCTTTGGCACCCCACATGTATGAGCCACACTTTAATTTCGCAACAGTCTCTGATAA
GATTGGAGATCTTCAGAGAAGCTACGTTGCTGCTCAGAAGTCTGAAGTGGCGTTTCCTGAACACGTGGAC
ACACAGCACTTAATTAAGCAGCTGAAGCAGCACTTTGCTATGCTCTGA

Translation (505 aa):
MGSEMEPLLRAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVDQEGIAEMILD
ENAIAQVPRPGTSLKLPGTNQTGGPTQAVRPITQAGRPITGFLRPSTQSGRPGTMEQAIRTPRTAYTARP
ITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTKYSQKPKLAKALFEYILHHENDVKMALDLASLSTEYS
QYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYIILDQPVTALNLFKQGLDKFPG
EVTLLCGIARIYEEMNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGVYNC
QLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAVGIGDTNLAHQCFRLALVHNNHH
AEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATVSDKIGDLQRSYVAAQKSEVAFPEHVD
TQHLIKQLKQHFAML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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