NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26075.1 Public Mus musculus 12 Ahsa1 23 108 98 CCDS HistoryNCBI Gene:217737Re-query CCDS DB by CCDS ID:26075.1Re-query CCDS DB by GeneID:217737See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021425.7 ENSMUSP00000021425.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021425.7Link to Ensembl Protein Viewer:ENSMUSP00000021425.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021425Re-query CCDS DB by Protein ID:ENSMUSP00000021425
Original member Current member NCBI NM_146036.2 NP_666148.1 Accepted alive Link to Nucleotide Sequence:NM_146036.2Link to Protein Sequence:NP_666148.1Re-query CCDS DB by Nucleotide ID:NM_146036Re-query CCDS DB by Protein ID:NP_666148Link to BLAST:NP_666148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666148.1 338 Q8BK64 338 100% 0 0

Chromosomal Locations for CCDS 26075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87266842 87266921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87268155 87268345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87269875 87269957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87270337 87270454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87271339 87271427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87272572 87272700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87273123 87273224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87273447 87273498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87273591 87273763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCCAAGTGGGGTGAGGGAGACCCACGCTGGATCGTGGAGGAGCGGGCGGACGCCACCAACGTCAACA
ACTGGCACTGGACAGAGAGAGATGCTTCAAATTGGTCCACAGAGAAACTGAAAACCCTGTTCCTGGCCGT
TCGAGTAGAAAATGAAGAGGGCAAGTGCGAGGTGACCGAAGTGAACAAGCTTGATGGGGAGGCATCCATC
AACAACAGGAAAGGCAAACTTATCTTCTTCTATGAGTGGACCATCAAACTGAACTGGACAGGTACCTCTA
AGTCAGGAGTGCAGTACAAAGGACATGTGGAAATCCCCAATTTGTCTGATGAAAATAGCGTGGATGAAGT
GGAGATTAGTGTGAGCCTTGCCAAAGATGAGCCTGACACAAATCTCGTGGCCTTAATGAAGGAAGACGGG
GTGAAACTTCTGAGAGAAGCAGTGGGAATTTACATCAGCACCCTCAAGACAGAGTTTACTCAGGGCATGA
TCTTGCCCACAGTGAATGGAGAGTCAGTAGATCCAGTGGGCCAGCCAGCACTAAAGACTGAGACTTGCAA
GGCTAAGTCTGCTCCTTCAAAAAGCCAGGCCAAACCTGTTGGTGTCAAAATCCCCACTTGTAAGATCACC
CTTAAAGAAACCTTCCTGACCTCCCCAGAGGAGCTCTATAGAGTGTTTACCACGCAGGAGCTGGTCCAGG
CCTTTACCCATGCCCCCGCTGCCTTGGAAGCCGACAGAGGTGGCAAGTTTCACATGGTCGATGGCAACGT
CACCGGGGAGTTTACTGACCTGGTCCCCGAGAAACACATTGCTATGAAGTGGAGGTTTAAGTCATGGCCA
GAGGGGCACTTTGCCACCATCACCTTGACCTTCATTGACAAGAATGGAGAGACAGAGCTGTGCATGGAAG
GCCGTGGCATCCCTGCTCCTGAGGAAGAGCGGACGCGGCAAGGCTGGCAGCGGTACTACTTTGAGGGCAT
CAAACAGACCTTTGGCTATGGTGCACGCTTGTTTTAG

Translation (338 aa):
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTEKLKTLFLAVRVENEEGKCEVTEVNKLDGEASI
NNRKGKLIFFYEWTIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEISVSLAKDEPDTNLVALMKEDG
VKLLREAVGIYISTLKTEFTQGMILPTVNGESVDPVGQPALKTETCKAKSAPSKSQAKPVGVKIPTCKIT
LKETFLTSPEELYRVFTTQELVQAFTHAPAALEADRGGKFHMVDGNVTGEFTDLVPEKHIAMKWRFKSWP
EGHFATITLTFIDKNGETELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTFGYGARLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH