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Report for CCDS26035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26035.1 Public Mus musculus 12 Acot4 23 108 98 CCDS HistoryNCBI Gene:171282Re-query CCDS DB by CCDS ID:26035.1Re-query CCDS DB by GeneID:171282See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021652.4 ENSMUSP00000021652.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021652.4Link to Ensembl Protein Viewer:ENSMUSP00000021652.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021652Re-query CCDS DB by Protein ID:ENSMUSP00000021652
Original member Current member NCBI NM_134247.3 NP_599008.3 Accepted alive Link to Nucleotide Sequence:NM_134247.3Link to Protein Sequence:NP_599008.3Re-query CCDS DB by Nucleotide ID:NM_134247Re-query CCDS DB by Protein ID:NP_599008Link to BLAST:NP_599008.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599008.3 421 Q8BWN8 421 100% 0 0

Chromosomal Locations for CCDS 26035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84038511 84038967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84041837 84042039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84043191 84043796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCAGCGACACTGAGCGTGGAGCCCACGGGCCGCAGCTGCTGGGACGAGCCGCTGAGCATCGCCGTGC
GCGGCCTGGCCCCCGAGCAGCCCGTCACGCTGCGCTCTGTCCTGCGCGACGAGAAGGGCGCGCTCTTCCG
AGCCCACGCGCGCTACCGCGCGGACTCCCACGGCGAGCTGGACCTGGCGCGCGTGCCCGCGCTGGGCGGC
AGCTTCTCGGGGCTCGAGCCCATGGGGCTGCTCTGGGCCATGGAGCCCGATCGGCCTTTCTGGCGCCTGA
TCAAGCGCGACGTGCAGACGCCCTTCTTGGTGGAGCTGGAGGTGCTGGACGGACACGAGCCCGATGGCGG
GCGGCGGCTGGCGCGGACGGTGCACGAGCGTCACTTCATGGCTCCCGGGGTGCGGCGCGTGCCCGTGCGC
GAGGGCCGGGTGCGCGCCACGCTCTTCCTGCCCCCAGGACAAGGACCCTTTCCAGGCATCATCGATGTTT
ATGGTGTTGGAGGAGGCCTGTTGGAATACCGAGCCGGCCTTGTGGCTGGCCATGGCTTTGCCACATTGGC
TCTGGCTTTTTATGACTTTGAGGATCTCCCCAAAGAGCTCAACGTCATAGAAGTGGACTACTTTGAAGAA
GCAGTGCGGTACATGCTTCGACATCCAAAGGTAAAAGGCCCAGACATTGGGCTTCTGGGTCTTTCCCTAG
GAGCTGATGTCTGTCTGATCATGGCTTCCTTCTTGAATAATGTCTCAGCCACAGTTTCCATCAATGGCTC
TGCATTCAGTGGAAACAGACATATCAAGTACAAGCAGACCATGATTCCGCCGTTGGGCCATGACCTGAGG
AGAATGAAGGTGGCTTTCTCTGGCATTCTGGACATTGTGGATATACGGAATGATGCTGTAGGAGGCTGTG
AGAACCCCAGCATGATACCAATAGAGAAGGCCAAGGGGCCCATCCTCTTTGTGGCTGGCCAGGATGATCA
TTGCTGGAGGAGTGAGTTATATACTCAGATAGCCTCGGACCGGTTACAGGCTCATGGAAAGGAAAGGCCC
CAGGTACTCTCTTACCCTGGGACTGGGCATTACATCGAACCACCTTACTTTCCCATGTGCCCAGCTTCCC
TGCACAAAATAGTGAACGAAGCTGTGATTTGGGGAGGGGAGGTCAAGGCTCACTCCAAAGCCCAGATAGA
TGCATGGAAGCAAATTCTATTCTTCTTTGGCAAACACCTGGGCAGTACCCACAGCAGAGCCTCCTGTAGA
CTGTAG

Translation (421 aa):
MAATLSVEPTGRSCWDEPLSIAVRGLAPEQPVTLRSVLRDEKGALFRAHARYRADSHGELDLARVPALGG
SFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFLVELEVLDGHEPDGGRRLARTVHERHFMAPGVRRVPVR
EGRVRATLFLPPGQGPFPGIIDVYGVGGGLLEYRAGLVAGHGFATLALAFYDFEDLPKELNVIEVDYFEE
AVRYMLRHPKVKGPDIGLLGLSLGADVCLIMASFLNNVSATVSINGSAFSGNRHIKYKQTMIPPLGHDLR
RMKVAFSGILDIVDIRNDAVGGCENPSMIPIEKAKGPILFVAGQDDHCWRSELYTQIASDRLQAHGKERP
QVLSYPGTGHYIEPPYFPMCPASLHKIVNEAVIWGGEVKAHSKAQIDAWKQILFFFGKHLGSTHSRASCR
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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