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Report for CCDS25986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25986.1 Public Mus musculus 12 Sgpp1 23 108 98 CCDS HistoryNCBI Gene:81535Re-query CCDS DB by CCDS ID:25986.1Re-query CCDS DB by GeneID:81535See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021450.5 ENSMUSP00000021450.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021450.5Link to Ensembl Protein Viewer:ENSMUSP00000021450.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021450Re-query CCDS DB by Protein ID:ENSMUSP00000021450
Original member Current member NCBI NM_030750.3 NP_109675.1 Accepted alive Link to Nucleotide Sequence:NM_030750.3Link to Protein Sequence:NP_109675.1Re-query CCDS DB by Nucleotide ID:NM_030750Re-query CCDS DB by Protein ID:NP_109675Link to BLAST:NP_109675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109675.1 430 Q9JI99 430 100% 0 0

Chromosomal Locations for CCDS 25986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 75716113 75716664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75722652 75722741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75734913 75735563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGTCCCTGGGGCAGCGGCTGGCTCTGCTGGCCAGCCGTCTGCAGGAGCCGCAGCGGGTGGCGAGCTTCC
AGCGTCTGTGTGGGGTGGAGGTGCCGCTCAGCAGCCCGGCGGCGGACGAGGATGCAGAGACCGAGGTTCG
CGGAGCCCCGGGAGAACCCCGGCGACGGGGACGGCAGCCGGGCGCTGAGGACAGCCCCGCCAAGGCGGAC
TGCTGCGGTGCCCCGAACGGCGTGCGCAACGGGCTGGCGGCCGAGCCGGGCCCGACCGGGCCCCGCCGCG
CGGGCTCGCAGCGCCGCAACTCGTTGACGGGCGAGGAGGGCGAGCTGGTCAAAGTGAGCAACTTGCCGCT
CTACTACCTGTTCTGCTTAGGCACGGAACTGGGCAACGAGCTCTTCTACATCTTATTCTTCCCCTTCTGG
ATCTGGAATCTCGACCCCTTTGTGGGCCGGAGGCTGGTGATCATCTGGGTGCTGGTCATGTACCTGGGCC
AGTGCACCAAGGACATCATCCGCTGGCCACGGCCGGCCTCGCCGCCTGTCATCAAGCTGGAGGTCTTCTA
CAACTCGGAATACAGCATGCCCTCCACGCATGCCATGTCAGGCACCGCCATCCCCATCGCCATGTTCCTG
CTCACCTATGGCCGCTGGCAGTATCCTCTTATCTACGGGCTGATTCTCATTCCCTGCTGGAGTTCACTAG
TTTGCCTAAGTAGAATCTACATGGGAATGCATTCTATCCTGGATGTCATTGCTGGATTCTTGTATACCAT
TTTAATCTTAATTATCTTCTACCCATTGGTGGACCTGATTGACAACTTCAACCAAACTTACAAATATGCG
CCGCTCATCATCATCGGGCTTCACTTAATTTTGGGCATCTTCTCTTTCACCCTTGACACCTGGAGCACAT
CCCGAGGAGACACGGCTGAGATTCTGGGAAGTGGTGCTGGGATTGCATGTGGCTCACACGCTGCTTATAC
CCTGGGCCTATCCTTAGAACCTTCTCTGCACATGTTACCCTTAGCTATCCCCCCTCTTACTGTAACTCTG
TTTGGAAAAGCCATATTACGGATCGTCCTAGGAATGCTGCTTGTACTGTTCGTGAGGGATATCATGAAGA
AGATCACCATTCCTCTAGCCTGTAAACTCTCCAGTATTCCGTGTCATGACATTCGCCAAGCAAGGCAGCA
CATGGAAGTGGAGCTGCCATACCGGTATATTACCTACGGGATGGTTGGGTTCTCCATCACGTTTTTGGTC
CCCTATGTATTTTCCTTTATTGGTATCTCTTGA

Translation (430 aa):
MSLGQRLALLASRLQEPQRVASFQRLCGVEVPLSSPAADEDAETEVRGAPGEPRRRGRQPGAEDSPAKAD
CCGAPNGVRNGLAAEPGPTGPRRAGSQRRNSLTGEEGELVKVSNLPLYYLFCLGTELGNELFYILFFPFW
IWNLDPFVGRRLVIIWVLVMYLGQCTKDIIRWPRPASPPVIKLEVFYNSEYSMPSTHAMSGTAIPIAMFL
LTYGRWQYPLIYGLILIPCWSSLVCLSRIYMGMHSILDVIAGFLYTILILIIFYPLVDLIDNFNQTYKYA
PLIIIGLHLILGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHAAYTLGLSLEPSLHMLPLAIPPLTVTL
FGKAILRIVLGMLLVLFVRDIMKKITIPLACKLSSIPCHDIRQARQHMEVELPYRYITYGMVGFSITFLV
PYVFSFIGIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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