NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25889.1 Public Mus musculus 12 Dgkb 23 108 98 CCDS HistoryNCBI Gene:217480Re-query CCDS DB by CCDS ID:25889.1Re-query CCDS DB by GeneID:217480See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040500.8 ENSMUSP00000037900.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040500.8Link to Ensembl Protein Viewer:ENSMUSP00000037900.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040500Re-query CCDS DB by Protein ID:ENSMUSP00000037900
Original member Current member EBI ENSMUST00000220990.1 ENSMUSP00000152378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220990.1Link to Ensembl Protein Viewer:ENSMUSP00000152378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220990Re-query CCDS DB by Protein ID:ENSMUSP00000152378
Original member Current member NCBI NM_001361688.1 NP_001348617.1 Accepted alive Link to Nucleotide Sequence:NM_001361688.1Link to Protein Sequence:NP_001348617.1Re-query CCDS DB by Nucleotide ID:NM_001361688Re-query CCDS DB by Protein ID:NP_001348617Link to BLAST:NP_001348617.1
Original member Current member NCBI NM_178681.5 NP_848796.2 Accepted alive Link to Nucleotide Sequence:NM_178681.5Link to Protein Sequence:NP_848796.2Re-query CCDS DB by Nucleotide ID:NM_178681Re-query CCDS DB by Protein ID:NP_848796Link to BLAST:NP_848796.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348617.1 795 Q6NS52-2 795 100% 0 0
NP_848796.2 795 Q6NS52-2 795 100% 0 0

Chromosomal Locations for CCDS 25889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 37981941 37982010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38084167 38084243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38100364 38100517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38114533 38114673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38120606 38120655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38124169 38124243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38127264 38127383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38136541 38136658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38139405 38139493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38139570 38139686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38147503 38147601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38166743 38166775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38173727 38173843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38184898 38184971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38190060 38190134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38214303 38214388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38216019 38216108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38227963 38228123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38329993 38330057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38427404 38427494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38438539 38438734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38602716 38602836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38604103 38604163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38630583 38630690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGACAAACCAGGAAAAATGGGCCCATCTCAGCCCCTCAGAATTTTCCCAACTTCAGAAATATGCTGAGT
ATTCTACAAAGAAATTAAAGGATGTTCTTGAAGAATTCCATGGTAATGGCGTGCTTGCAAAGTATAATCC
TGAAGGGACCATAGATTTTGAAGGCTTCAAGCTATTCATGAAGACCTTTCTGGAAGCTGAGCTGCCTGAC
GATTTCACCGCCCACCTTTTTATGTCATTCAGCAACAAATTTCCCCATTCTAGCCCAAATGTAAAGAGTA
AGCCCGCTCTTCTTTCAGGTGGTCTCAGGATGAATAAGGGTGCCATCACCCCTCCACGTTCCTCTCCAGC
AAATACATGCTCCCCAGAAGTGATCCACCTCAAGGATATCGTCTGCTACCTGTCTCTTCTCGAAAGAGGA
AGACCCGAGGATAAGCTCGAGTTTATGTTTCGCCTTTATGACACCGATGGGAATGGCTTCCTGGACAGCT
CGGAATTAGAAAATATTATTGGTCAGATGATGCACGTGGCAGAGTACCTCGAATGGGATGTTACCGAACT
TAATCCGATCCTTCATGAAATGATGGAAGAAATTGACTATGACCGGGATGGCACTGTGTCTCTGGAGGAG
TGGATTCAAGGAGGAATGACAACTATCCCACTTCTAGTCCTGCTGGGCTTGGAGAATAATGTGAAGGATG
ATGGACAGCATGTGTGGCGACTCAAGCACTTTAACAAGCCTGCCTACTGCAATCTCTGCCTGAACATGCT
GATTGGCGTGGGGAAGCAGGGCCTCTGCTGCTCCTTCTGCAAGTACACGGTCCATGAGCGCTGTGTGGCC
AGAGCCCCGCCCTCCTGCATCAAGACATATGTGAAGTCCAAGAAAAACACAGACGTCATGCACCACTATT
GGGTCGAAGGCAATTGCCCAACCAAGTGCGATAAGTGCCACAAAACAGTGAAATGTTACCAGGGCCTGAC
GGGCCTGCATTGTGTTTGGTGCCAGACCACACTGCACAATAAATGTGCTTCTCATCTGAAGCCCGAGTGT
GACTGTGGACCCTTGAAGGACCATATTTTGCCACCTACCACAATCTGTCCAGTTGTATTGACTATGCCCA
GTGCTGGAGCCTCAGTTCCTGAGGAAAGACAGTCCACAGCTAAAAAGGAAAAGAGCAGCTCCCAGCAGCC
AAATAAAGCAACAGACAAAAATAAAATGCAAAGAGCTAACTCAGTTACTATGGATGGACAAGGTTTGCAG
ATCACTCCTGTTCCTGGCACACATCCGCTTCTAGTTTTTGTCAACCCTAAAAGTGGTGGGAAGCAAGGAG
AACGAATTTACAGAAAATTCCAGTATCTCCTAAATCCTCGTCAGGTTTACAGTCTTTCTGGAAATGGACC
AATGCCAGGGTTACACTTTTTTCGCGATGTCCCTGACTTCAGAGTGTTAGCATGCGGTGGAGATGGGACT
GTGGGCTGGATTTTGGATTGCATAGAGAAGGCCAATGTAGTCAAGCACCCTCCAGTTGCCATCCTGCCTC
TTGGGACTGGCAATGACTTAGCAAGGTGCCTGCGGTGGGGTGGAGGTTATGAAGGGGAAAATCTTATGAA
GATCCTAAAAGACATTGAAAGCAGCACAGAAATCATGCTGGACAGGTGGAAGTTTGAAGTCACACCCAAC
GACAAAGATGAGAAAGGAGACCCTGTGCCTTACAGCATCATCAATAACTACTTTTCCATTGGCGTGGATG
CCTCCATTGCACACAGATTCCACATCATGAGAGAAAAGCACCCAGAGAAATTCAACAGCCGAATGAAGAA
CAAATTTTGGTACTTTGAGTTTGGCACATCTGAAACCTTCTCAGCGACCTGCAAGAAGCTGCATGAATCT
GTAGAAATAGAATGTGATGGAGTACAAATAGATTTGATAAACATCTCTCTGGAAGGAATTGCAATTTTGA
ATATACCAAGCATGCATGGAGGATCTAATCTTTGGGGAGAGTCTAAAAAGAAAAGAAGCCATCGACGAAT
AGAGAAAAAAGGCTCTGACAAAAGACCCACTCTCACAGATGCAAAAGAGCTGAAGTTTGCAAGTCAAGAT
CTGAGTGACCAGCTGCTGGAGGTCGTTGGCTTGGAAGGAGCAATGGAAATGGGCCAAATTTACACGGGCC
TGAAAAGTGCGGGCCGGCGGCTGGCTCAGTGCTCCTCTGTGGTTATCAGAACAAGCAAGTCACTGCCAAT
GCAGATTGATGGAGAGCCCTGGATGCAGACCCCATGCACAATAAAAATTACACACAAGAACCAAGCCCCA
ATGCTGATGGGCCCTCCACCCAAAACTGGATTATTCTGCTCACTTATCAAAAGAACAAGAAACCGAAGCA
AGGAGTGA

Translation (795 aa):
MTNQEKWAHLSPSEFSQLQKYAEYSTKKLKDVLEEFHGNGVLAKYNPEGTIDFEGFKLFMKTFLEAELPD
DFTAHLFMSFSNKFPHSSPNVKSKPALLSGGLRMNKGAITPPRSSPANTCSPEVIHLKDIVCYLSLLERG
RPEDKLEFMFRLYDTDGNGFLDSSELENIIGQMMHVAEYLEWDVTELNPILHEMMEEIDYDRDGTVSLEE
WIQGGMTTIPLLVLLGLENNVKDDGQHVWRLKHFNKPAYCNLCLNMLIGVGKQGLCCSFCKYTVHERCVA
RAPPSCIKTYVKSKKNTDVMHHYWVEGNCPTKCDKCHKTVKCYQGLTGLHCVWCQTTLHNKCASHLKPEC
DCGPLKDHILPPTTICPVVLTMPSAGASVPEERQSTAKKEKSSSQQPNKATDKNKMQRANSVTMDGQGLQ
ITPVPGTHPLLVFVNPKSGGKQGERIYRKFQYLLNPRQVYSLSGNGPMPGLHFFRDVPDFRVLACGGDGT
VGWILDCIEKANVVKHPPVAILPLGTGNDLARCLRWGGGYEGENLMKILKDIESSTEIMLDRWKFEVTPN
DKDEKGDPVPYSIINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFEFGTSETFSATCKKLHES
VEIECDGVQIDLINISLEGIAILNIPSMHGGSNLWGESKKKRSHRRIEKKGSDKRPTLTDAKELKFASQD
LSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCSSVVIRTSKSLPMQIDGEPWMQTPCTIKITHKNQAP
MLMGPPPKTGLFCSLIKRTRNRSKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH