NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25803.1 Public Mus musculus 12 Sdc1 23 108 98 CCDS HistoryNCBI Gene:20969Re-query CCDS DB by CCDS ID:25803.1Re-query CCDS DB by GeneID:20969See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020911.13 ENSMUSP00000020911.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020911.13Link to Ensembl Protein Viewer:ENSMUSP00000020911.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020911Re-query CCDS DB by Protein ID:ENSMUSP00000020911
Original member Current member EBI ENSMUST00000171158.7 ENSMUSP00000131491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171158.7Link to Ensembl Protein Viewer:ENSMUSP00000131491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171158Re-query CCDS DB by Protein ID:ENSMUSP00000131491
Original member Current member NCBI NM_011519.2 NP_035649.1 Accepted alive Link to Nucleotide Sequence:NM_011519.2Link to Protein Sequence:NP_035649.1Re-query CCDS DB by Nucleotide ID:NM_011519Re-query CCDS DB by Protein ID:NP_035649Link to BLAST:NP_035649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035649.1 311 P18828-1 311 100% 0 0

Chromosomal Locations for CCDS 25803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8771636 8771701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8789407 8789488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8790385 8790866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8791291 8791426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8791638 8791807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAGACGCGCGGCGCTCTGGCTCTGGCTCTGCGCGCTGGCGCTGCGCCTGCAGCCTGCCCTCCCGCAAA
TTGTGGCTGTAAATGTTCCTCCTGAAGATCAGGATGGCTCTGGGGATGACTCTGACAACTTCTCTGGCTC
TGGCACAGGTGCTTTGCCAGATACTTTGTCACGGCAGACACCTTCCACTTGGAAGGACGTGTGGCTGTTG
ACAGCCACGCCCACAGCTCCAGAGCCCACCAGCAGCAACACCGAGACTGCTTTTACCTCTGTCCTGCCAG
CCGGAGAGAAGCCCGAGGAGGGAGAGCCTGTGCTCCATGTAGAAGCAGAGCCTGGCTTCACTGCTCGGGA
CAAGGAAAAGGAGGTCACCACCAGGCCCAGGGAGACCGTGCAGCTCCCCATCACCCAACGGGCCTCAACA
GTCAGAGTCACCACAGCCCAGGCAGCTGTCACATCTCATCCGCACGGGGGCATGCAACCTGGCCTCCATG
AGACCTCGGCTCCCACAGCACCTGGTCAACCTGACCATCAGCCTCCACGTGTGGAGGGTGGCGGCACTTC
TGTCATCAAAGAGGTTGTCGAGGATGGAACTGCCAATCAGCTTCCCGCAGGAGAGGGCTCTGGAGAACAA
GACTTCACCTTTGAAACATCTGGGGAGAACACAGCTGTGGCTGCCGTAGAGCCCGGCCTGCGGAATCAGC
CCCCGGTGGACGAAGGAGCCACAGGTGCTTCTCAGAGCCTTTTGGACAGGAAGGAAGTGCTGGGAGGTGT
CATTGCCGGAGGCCTAGTGGGCCTCATCTTTGCTGTGTGCCTGGTGGCTTTCATGCTGTACCGGATGAAG
AAGAAGGACGAAGGCAGCTACTCCTTGGAGGAGCCCAAACAAGCCAATGGCGGTGCCTACCAGAAACCCA
CCAAGCAGGAGGAGTTCTACGCCTGA

Translation (311 aa):
MRRAALWLWLCALALRLQPALPQIVAVNVPPEDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLL
TATPTAPEPTSSNTETAFTSVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRAST
VRVTTAQAAVTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGEQ
DFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAVCLVAFMLYRMK
KKDEGSYSLEEPKQANGGAYQKPTKQEEFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH