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Report for CCDS25766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25766.1 Public Mus musculus 11 Sectm1a 23 108 98 CCDS HistoryNCBI Gene:209588Re-query CCDS DB by CCDS ID:25766.1Re-query CCDS DB by GeneID:209588See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026162.11 ENSMUSP00000026162.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026162.11Link to Ensembl Protein Viewer:ENSMUSP00000026162.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026162Re-query CCDS DB by Protein ID:ENSMUSP00000026162
Original member Current member NCBI NM_145373.2 NP_663348.2 Accepted alive Link to Nucleotide Sequence:NM_145373.2Link to Protein Sequence:NP_663348.2Re-query CCDS DB by Nucleotide ID:NM_145373Re-query CCDS DB by Protein ID:NP_663348Link to BLAST:NP_663348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663348.2 192 Q921W8 192 99.4792% 0 1

Chromosomal Locations for CCDS 25766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121068722 121068846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121069035 121069088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121069588 121069896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121075566 121075656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGATGACCTGCCCTTCAGTGCCTGCTATCCCTACCCTCTGGCTGTTCAGCATCCTGCTCCTGGTGGTCT
CCCTGAATGCTCAGAATAAAAGCTGGGACAACCCTATCTGCACGGAGGGCATCCTGTCTGTGCCTCGAGG
CAATCCTGCAGTGATGACCTGTAACATCTCTAACACCTTCACCGATGTCACCATCCAGCTGTCTGCCAAT
GGAAAGGACAAGACCATCTTCGATAAAAAGCCCCAAGGAAACTTCTCTTGGCGTGGGTGGGAGCTCCAAG
TTCAAGGGGGGCTGGCACAGCTTGTGATCAAAGACACCCAGGACGACCACACAGGGATATACTTGTGGCA
GCTGCATGGACGCCAGAGATGCTACAAAAACATCACCCTGAATATCTTAGAGCCTTCCAACGAGGACAAG
GTCCCAGACACTACGCTCTTTACATCCTTCCCAGATCACGCGAAGAGCTCTCCAATAGAGGGCAAGCCTG
GGACCCTTGTGGGAGTCATCACTGTCATCTTCATCTTGGGAGTCGCCGGATTCATTACGTTTATCTACTA
CAGGCACCGTCGTTCCTAG

Translation (192 aa):
MMTCPSVPAIPTLWLFSILLLVVSLNAQNKSWDNPICTEGILSVPRGNPAVMTCNISNTFTDVTIQLSAN
GKDKTIFDKKPQGNFSWRGWELQVQGGLAQLVIKDTQDDHTGIYLWQLHGRQRCYKNITLNILEPSNEDK
VPDTTLFTSFPDHAKSSPIEGKPGTLVGVITVIFILGVAGFITFIYYRHRRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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