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Report for CCDS25762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25762.1 Public Mus musculus 11 Csnk1d 23 108 98 CCDS HistoryNCBI Gene:104318Re-query CCDS DB by CCDS ID:25762.1Re-query CCDS DB by GeneID:104318See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018274.9 ENSMUSP00000018274.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018274.9Link to Ensembl Protein Viewer:ENSMUSP00000018274.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018274Re-query CCDS DB by Protein ID:ENSMUSP00000018274
Original member NCBI NM_139059.2 NP_620690.1 Updated not alive Link to Nucleotide Sequence:NM_139059.2Link to Protein Sequence:NP_620690.1Re-query CCDS DB by Nucleotide ID:NM_139059Re-query CCDS DB by Protein ID:NP_620690
Current member NCBI NM_139059.3 NP_620690.1 Accepted alive Link to Nucleotide Sequence:NM_139059.3Link to Protein Sequence:NP_620690.1Re-query CCDS DB by Nucleotide ID:NM_139059Re-query CCDS DB by Protein ID:NP_620690Link to BLAST:NP_620690.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620690.1 415 Q9DC28-1 415 100% 0 0

Chromosomal Locations for CCDS 25762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120963856 120963906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120967995 120968134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120969023 120969194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120971567 120971715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120972377 120972547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120972966 120973194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120973821 120973969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120983233 120983343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120990935 120991010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGAGCTGAGGGTCGGGAACAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCTCCTTCGGAGACATCT
ATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGCTTGAATGTGTCAAAACCAAACATCC
TCAGCTCCACATTGAGAGCAAGATCTACAAAATGATGCAGGGAGGAGTGGGCATCCCTACCATCAGATGG
TGTGGGGCTGAGGGGGACTACAATGTCATGGTGATGGAGCTACTGGGACCCAGCCTGGAAGACCTGTTCA
ACTTCTGTTCAAGGAAGTTTAGTCTCAAAACTGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTATTGA
GTACATTCATTCGAAGAATTTTATCCACCGAGATGTGAAGCCAGATAACTTCCTCATGGGGCTGGGAAAG
AAAGGCAACCTGGTCTACATCATTGACTTTGGGCTGGCCAAGAAGTATCGGGATGCACGCACCCACCAGC
ATATCCCCTATCGAGAGAACAAGAACCTCACAGGGACAGCACGCTATGCCTCCATCAACACGCACCTTGG
CATTGAACAATCTCGAAGGGATGACTTGGAGTCTCTGGGGTACGTGCTGATGTACTTCAACCTGGGCTCT
CTCCCCTGGCAGGGGCTGAAGGCCGCCACCAAGAGGCAGAAGTATGAGAGGATCAGTGAGAAGAAGATGT
CCACTCCCATTGAAGTGCTGTGCAAGGGCTATCCTTCTGAATTTGCCACATACCTGAATTTCTGCCGTTC
CTTACGTTTTGATGACAAACCTGACTACTCCTACCTGAGACAGCTCTTCAGAAATCTGTTCCATCGCCAA
GGCTTCTCCTACGACTATGTGTTCGACTGGAACATGCTCAAATTTGGTGCCAGCCGGGCTGCAGATGATG
CTGAGCGGGAACGCCGGGATCGAGAAGAACGATTAAGACACTCCCGGAATCCAGCCACTCGTGGCCTCCC
TTCTACAGCTTCCGGCCGTCTGCGGGGAACCCAGGAAGTGGCTCCCCCAACGCCCCTTACCCCTACCTCA
CACACGGCCAACACCTCTCCGAGGCCTGTCTCTGGCATGGAACGAGAACGGAAAGTGAGTATGCGGCTGC
ACCGTGGGGCCCCAGTCAACGTCTCCTCATCTGATCTCACGGGCCGACAAGATACCTCTCGCATGTCCAC
CTCACAGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGA

Translation (415 aa):
MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRW
CGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGK
KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS
LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ
GFSYDYVFDWNMLKFGASRAADDAERERRDREERLRHSRNPATRGLPSTASGRLRGTQEVAPPTPLTPTS
HTANTSPRPVSGMERERKVSMRLHRGAPVNVSSSDLTGRQDTSRMSTSQIPGRVASSGLQSVVHR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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